Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00965 ATGGAGAGGATTCCAGAATCAAAAGCACTTCCATTATTACTGCCCATAGAGATGCTTCCTGAATCAAAGCTACGTCCGGGAAAATTTTGTGTTTTGGATGATATACCAAAAACACACATGGCCTCAGCCAAGCAAGCTGGCCATTGGTCGAACATGCACTCAGCTAAGGTAAGAGAAGTAGGAAGACCTATTGGACAAGGATATCAAGATCTAGAATTTACTGTACCTATACGGACAATGAAGGGGAAATCCTCTTTTTTGGGGCAGGAAGAACCTAAGCGTGATGCCACATTAAAGGGTAGTAGAAATTTAATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCGCCAGAGCCTGTGGATATGGATCTTATGAGAACAGTTTATGTACCCATAGGGCAGAATAAACCGGATGCCCGGTGCTTGATGAAGAGTTTTTCAGTGAAGGGCCCTTTTCTTGAGGATCTTTCAATCAGGGTTCCAGCCAAGAAACCAAGCCCAGCTGTTCTCTCCCCTGCAGAAAGCTTAGTTGATGAACCACATGAGTTGGGTGTTTTATCTTCCCCCGTTTCAATTCCTCGTGCATCACAAAATACAGAAACCTCCCTCCTTCCCCCAGATTCGGAGGAGAAAGAATGTGTTTGGGATGCTTCTTTGCCCCCAAGTGGGAATGTAAGTCCACACAGTAGCATTGATAGCAGTGGAGTTGTCACAGCTATGAGCGTGGTTAATAGTTGTGGTAGCGCATATCGAAGTGATGGAATGGTTAGTATTGAGAGAAACTGTGAAAGTACAAAAGGAAGCATTAGAGGGGACTCTCTTGAGAGTGCAAAAACAAGTATTAGTCGTGCTAGTGATAGCAGTGGTCTTAGTGATGATAGTAGTTGGAGTAACATTACAGGAAGTGCTAATAAACCCCACAAAGGAAACGATCCTAGATGGAAAGCCATTCTTGCTATTCGAGCTAGAGATGGAATATTAGGCATGAGCCATTTTAAGCTTCTGAAAAGACTTGGATGTGGTGATATTGGTAGTGTTTATCTGTCAGAGCTAAGTGGGACTCGTTGTCATTTTGCAATGAAAGTAATGGACAAGGCATCGCTTGCTATCAGGAAGAAGTTAACGAGAGCTCAGACAGAAAGGGAGATCTTACAATTACTTGACCATCCATTTCTGCCGACTTTGTACACCCACTTCGAGACTGACAGGTTTTGCTGTCTAGTAATGGAGTATTGTCCAGGAGGAGACCTGCACACTTTGAGGCAACGACAGCCAGGGAAACACTTCTCTGAGTATGCTGCAAGGTTTTATGCAGCAGAGGTTCTACTGGCACTCGAATATCTACACATGCTTGGTGTTGTCTATAGGGACTTGAAACCAGAGAATGTACTGGTTCGTGATGATGGCCACATAATGCTCTCAGATTTCGACCTTTCCCTAAGATGTGCAGTGTCGCCCACCCTGATACGAACCTCATACGATTCCGATCCATCTAAACGAGGATTTTGTGTCCAGCCTGCCTGTATTGAGCCCTCATCAGTTTGCATCCAACCTTCATGCTTTCTTCCTCGACTCTTCCCTCAGAAAAGCAAAAAGAAAAGTCCCAAGCCTCGAAGTGAGCTGGGGTTGCAATCTAGTGCTCTTCCCGAGCTGGTAGCAGAGCCTACTGCTGCGCGATCCATGTCTTTTGTTGGCACCCACGAGTACCTAGCCCCTGAAATCATTAAAGGAGAGGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTACATGAACTATTGTATGGAAAAACCCCATTCAAGGGATCAGGGAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAGCTGAAGTTCCCAGAGTCTCCCGCAACTAGTTATGCTAGCCGAGATCTTATTAGAGGTTTACTCGTGAAGGAGCCACAGCATCGACTTGGGGTCAAGAGGGGTGCAACTGAGATCAAGCAACATCCTTTCTTTGAAGGTGTGAATTGGGCTTTGATTCGATGCAGCACGCCCCCAGAAGTGCCTAGACCAATGGAGGCCGAACTGCCTAAGTTTGGGGTAGCTGACACAACAGGGGTTGGCGGAGGCGGAGGCGTCGGCGTCGGCAGCGGCAGTAAGAGGAGGGTAGGTACAGATGTTGTGAAGTCCGGTGGTCAATATCTTGACTTCGAGTTCTTTTAA 2205 46.39 MERIPESKALPLLLPIEMLPESKLRPGKFCVLDDIPKTHMASAKQAGHWSNMHSAKVREVGRPIGQGYQDLEFTVPIRTMKGKSSFLGQEEPKRDATLKGSRNLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPIGQNKPDARCLMKSFSVKGPFLEDLSIRVPAKKPSPAVLSPAESLVDEPHELGVLSSPVSIPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPHSSIDSSGVVTAMSVVNSCGSAYRSDGMVSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFKLLKRLGCGDIGSVYLSELSGTRCHFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFCCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIRTSYDSDPSKRGFCVQPACIEPSSVCIQPSCFLPRLFPQKSKKKSPKPRSELGLQSSALPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVADTTGVGGGGGVGVGSGSKRRVGTDVVKSGGQYLDFEFF 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7557283 7562061 - CmoCh06G009650.1 Cmo06g00965 384527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00965 734 SMART serkin_6 335 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00965 734 MobiDBLite consensus disorder prediction 193 214 - -
Cmo06g00965 734 Pfam Protein kinase domain 563 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00965 734 Pfam Protein kinase domain 336 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00965 734 Gene3D Phosphorylase Kinase; domain 1 333 418 - -
Cmo06g00965 734 MobiDBLite consensus disorder prediction 269 308 - -
Cmo06g00965 734 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Cmo06g00965 734 Gene3D Transferase(Phosphotransferase) domain 1 419 487 - -
Cmo06g00965 734 CDD STKc_phototropin_like 333 685 - -
Cmo06g00965 734 SUPERFAMILY Protein kinase-like (PK-like) 317 688 IPR011009 -
Cmo06g00965 734 PANTHER FLIPPASE KINASE 1-RELATED 4 734 - -
Cmo06g00965 734 MobiDBLite consensus disorder prediction 193 207 - -
Cmo06g00965 734 MobiDBLite consensus disorder prediction 269 312 - -
Cmo06g00965 734 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 734 - -
Cmo06g00965 734 ProSiteProfiles Protein kinase domain profile. 335 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00965 734 Gene3D Transferase(Phosphotransferase) domain 1 562 683 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00965 Cmo-Chr6:7557283 Cmo18g00610 Cmo-Chr18:7402842 0 dispersed
Cmo14g02239 Cmo-Chr14:15877005 Cmo06g00965 Cmo-Chr6:7557283 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74420 PF00069 Pkinase 1.60E-36 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00965 - - cmax:111472908 1406.35