Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00970 ATGGGTAAGAAGGGAGGCTCCTCCTGGTTGACTGCTGTCAAAAGGGCTTTTAGATCTCCTTCCAAGGATGAAGATGACAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCACCAATCTACACGATACGGATACTCACCAAACGCCGTCGGCTACGGAACATGCATCTTCCGAGGCAGCGCTTGCGGTTGCGGTGGCTACTGCTGAAGCTGCTGTCGCCACTGCTCAAGCGGCTGTGGAGATTGCTCGCCTACCTACTCGGCCTTCCAATCACGCTAGATATCACTATGCTGCGATTGTTATTCAAACCGCTTTTAGAGGATACTTGGCAAGGAGGGCTCTGCGTGCGCTGAAGGGGTTGGTGAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTGAGAAAACAGGCGAAGATGACCCTTCGATGCATGCAAGCTCTGGTTCGAGTGCAAGCCCGTGTGCTCGATCAGCGGATGAGACTCTCCCATGACGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTATCTCCAAAACTTCTCCGATAGAAAATCCGTTTCTCAGTCAAGGGAGGGAAGTAGCACTGTCACAGACGATTGGGATGAACGGCCCCACTCTGTTGAAGAAGTGAAAGCTATGCTTCAACACAGAAAAGAGATCGCCATGAAGCGTGATCGAAATCTCTCCCACGCCTTCTCCCAACAGATATGGCGGAGAGGTCGAAGTCCATCCATGGGAAGCGGAGATGATCTAGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATTGGAAAATAGGGGAAGAGCTTCAACGGATCAAAGAGACCCCATCAAAACAGTGGAAATCGACACCTTCCAGCCCTACTCTCACCGGAGAACGGTTCAGAATCAACAAAGAACAAATCCACATTCCGGCAGCTCGCCACTCCACCGGTCGCAACAAAACATACCCTGTTTCCACCACTCACCAGCCACACCGTCCCCATCTAAAACAAGGCCTCTGCTAGTCCGGTCCGCAAGCCCACGTATCATCAGAGACGACAAAAGCGAAAACACATCCCAAACACCAAGCTTAAGGTCAAACTATTACTACAGTGGCAATTTACTTCAACAAAGTAGAACAGCAGCAAGTAGCAGCTATAGCCAAGGCAATTGTTTGCCGAATTACATGGCAGCCACAGAGTCCGCAAAGGCACGATTACGGTCACATAGCGCGCCAAGACAACGGCCATCAACGCCGGAGAGGGAGAGAGGAGTTGGGTCAGCAAAAAAACGGCTATCGTTCCCAGTTCCGGATCCAAATGGGTATGGCGTTTACGAGCGAAATTTGAAAAGTCCAAGCTTCAAGAGCGTAAGCGGGACATACTTTGGGATGGAGCAGCAATCCAACTATTCATCTTGCTGCACCGACAGCCTCGGCGGCGAGATTTCCCCTTCTTCAACGACGGATCTAAGAAGATGGCTAAGGTGA 1503 50.77 MGKKGGSSWLTAVKRAFRSPSKDEDDKKREKRRWIFRRSTNLHDTDTHQTPSATEHASSEAALAVAVATAEAAVATAQAAVEIARLPTRPSNHARYHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHDGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSTVTDDWDERPHSVEEVKAMLQHRKEIAMKRDRNLSHAFSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRKPLENRGRASTDQRDPIKTVEIDTFQPYSHRRTVQNQQRTNPHSGSSPLHRSQQNIPCFHHSPATPSPSKTRPLLVRSASPRIIRDDKSENTSQTPSLRSNYYYSGNLLQQSRTAASSSYSQGNCLPNYMAATESAKARLRSHSAPRQRPSTPERERGVGSAKKRLSFPVPDPNGYGVYERNLKSPSFKSVSGTYFGMEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7633142 7635661 - CmoCh06G009700.1 Cmo06g00970 384532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00970 500 MobiDBLite consensus disorder prediction 1 57 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 297 345 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 419 433 - -
Cmo06g00970 500 Pfam Protein of unknown function (DUF4005) 351 450 IPR025064 -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 190 211 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 17 44 - -
Cmo06g00970 500 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Cmo06g00970 500 MobiDBLite consensus disorder prediction 481 500 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 407 447 - -
Cmo06g00970 500 SMART iq_5 95 117 IPR000048 GO:0005515
Cmo06g00970 500 SMART iq_5 118 139 IPR000048 GO:0005515
Cmo06g00970 500 Pfam IQ calmodulin-binding motif 123 139 IPR000048 GO:0005515
Cmo06g00970 500 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515
Cmo06g00970 500 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 500 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 241 371 - -
Cmo06g00970 500 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Cmo06g00970 500 PANTHER IQ-DOMAIN 5-RELATED 1 500 - -
Cmo06g00970 500 Gene3D - 93 148 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 252 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01149 Cmo-Chr2:6953872 Cmo06g00970 Cmo-Chr6:7633142 3.60E-31 dispersed
Cmo06g00970 Cmo-Chr6:7633142 Cmo17g00478 Cmo-Chr17:3532699 3.90E-178 dispersed
Cmo06g00970 Cmo-Chr6:7633142 Cmo04g02721 Cmo-Chr4:19731029 8.53E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00970 - - csv:101221270 677.937