Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00970 ATGGGTAAGAAGGGAGGCTCCTCCTGGTTGACTGCTGTCAAAAGGGCTTTTAGATCTCCTTCCAAGGATGAAGATGACAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCACCAATCTACACGATACGGATACTCACCAAACGCCGTCGGCTACGGAACATGCATCTTCCGAGGCAGCGCTTGCGGTTGCGGTGGCTACTGCTGAAGCTGCTGTCGCCACTGCTCAAGCGGCTGTGGAGATTGCTCGCCTACCTACTCGGCCTTCCAATCACGCTAGATATCACTATGCTGCGATTGTTATTCAAACCGCTTTTAGAGGATACTTGGCAAGGAGGGCTCTGCGTGCGCTGAAGGGGTTGGTGAAGTTGCAGGCTTTGGTGAGGGGTCACAACGTGAGAAAACAGGCGAAGATGACCCTTCGATGCATGCAAGCTCTGGTTCGAGTGCAAGCCCGTGTGCTCGATCAGCGGATGAGACTCTCCCATGACGGCAGTAGAAAATCCACCTTCAGCGACACAAATAGCGTCCTTGGATCGCGTTATCTCCAAAACTTCTCCGATAGAAAATCCGTTTCTCAGTCAAGGGAGGGAAGTAGCACTGTCACAGACGATTGGGATGAACGGCCCCACTCTGTTGAAGAAGTGAAAGCTATGCTTCAACACAGAAAAGAGATCGCCATGAAGCGTGATCGAAATCTCTCCCACGCCTTCTCCCAACAGATATGGCGGAGAGGTCGAAGTCCATCCATGGGAAGCGGAGATGATCTAGAAGAAAGACCCAAATGGCTGGATCAATGGAATTCAAGGAAGCCATTGGAAAATAGGGGAAGAGCTTCAACGGATCAAAGAGACCCCATCAAAACAGTGGAAATCGACACCTTCCAGCCCTACTCTCACCGGAGAACGGTTCAGAATCAACAAAGAACAAATCCACATTCCGGCAGCTCGCCACTCCACCGGTCGCAACAAAACATACCCTGTTTCCACCACTCACCAGCCACACCGTCCCCATCTAAAACAAGGCCTCTGCTAGTCCGGTCCGCAAGCCCACGTATCATCAGAGACGACAAAAGCGAAAACACATCCCAAACACCAAGCTTAAGGTCAAACTATTACTACAGTGGCAATTTACTTCAACAAAGTAGAACAGCAGCAAGTAGCAGCTATAGCCAAGGCAATTGTTTGCCGAATTACATGGCAGCCACAGAGTCCGCAAAGGCACGATTACGGTCACATAGCGCGCCAAGACAACGGCCATCAACGCCGGAGAGGGAGAGAGGAGTTGGGTCAGCAAAAAAACGGCTATCGTTCCCAGTTCCGGATCCAAATGGGTATGGCGTTTACGAGCGAAATTTGAAAAGTCCAAGCTTCAAGAGCGTAAGCGGGACATACTTTGGGATGGAGCAGCAATCCAACTATTCATCTTGCTGCACCGACAGCCTCGGCGGCGAGATTTCCCCTTCTTCAACGACGGATCTAAGAAGATGGCTAAGGTGA 1503 50.77 MGKKGGSSWLTAVKRAFRSPSKDEDDKKREKRRWIFRRSTNLHDTDTHQTPSATEHASSEAALAVAVATAEAAVATAQAAVEIARLPTRPSNHARYHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHDGSRKSTFSDTNSVLGSRYLQNFSDRKSVSQSREGSSTVTDDWDERPHSVEEVKAMLQHRKEIAMKRDRNLSHAFSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRKPLENRGRASTDQRDPIKTVEIDTFQPYSHRRTVQNQQRTNPHSGSSPLHRSQQNIPCFHHSPATPSPSKTRPLLVRSASPRIIRDDKSENTSQTPSLRSNYYYSGNLLQQSRTAASSSYSQGNCLPNYMAATESAKARLRSHSAPRQRPSTPERERGVGSAKKRLSFPVPDPNGYGVYERNLKSPSFKSVSGTYFGMEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7633142 7635661 - CmoCh06G009700.1 Cmo06g00970 384532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00970 500 MobiDBLite consensus disorder prediction 1 57 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 297 345 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 419 433 - -
Cmo06g00970 500 Pfam Protein of unknown function (DUF4005) 351 450 IPR025064 -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 190 211 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 17 44 - -
Cmo06g00970 500 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Cmo06g00970 500 MobiDBLite consensus disorder prediction 481 500 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 407 447 - -
Cmo06g00970 500 SMART iq_5 95 117 IPR000048 GO:0005515
Cmo06g00970 500 SMART iq_5 118 139 IPR000048 GO:0005515
Cmo06g00970 500 Pfam IQ calmodulin-binding motif 123 139 IPR000048 GO:0005515
Cmo06g00970 500 Pfam IQ calmodulin-binding motif 99 117 IPR000048 GO:0005515
Cmo06g00970 500 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 500 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 241 371 - -
Cmo06g00970 500 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Cmo06g00970 500 PANTHER IQ-DOMAIN 5-RELATED 1 500 - -
Cmo06g00970 500 Gene3D - 93 148 - -
Cmo06g00970 500 MobiDBLite consensus disorder prediction 252 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00970 - - - csv:101221270 677.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01149 Cmo-Chr2:6953872 Cmo06g00970 Cmo-Chr6:7633142 3.60E-31 dispersed
Cmo06g00970 Cmo-Chr6:7633142 Cmo17g00478 Cmo-Chr17:3532699 3.90E-178 dispersed
Cmo06g00970 Cmo-Chr6:7633142 Cmo04g02721 Cmo-Chr4:19731029 8.53E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g01429 CCT,ECH 99 267 IQD Protein Family AT3G09710 54.7 1.4e-46 184.9
Cmo18g00887 . 102 270 IQD Protein Family AT3G09710 51.4 3.3e-40 163.7
Cmo06g00353 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.1e-62 236.1
Cmo04g02721 CCT,CST,ECH 1 478 IQD Protein Family AT3G52290 54.1 4.1e-98 355.9
Cmo15g00445 CCT,CST,ECH 1 452 IQD Protein Family AT3G52290 50.4 1.7e-88 323.9
Cmo11g00931 CST 1 412 IQD Protein Family AT3G22190 57.2 4.2e-95 345.9
Cmo10g00895 CST 23 388 IQD Protein Family AT3G22190 57.9 8.4e-88 321.6
Cmo01g01783 . 1 434 IQD Protein Family AT2G26180 59.7 6.1e-115 411.8
Cmo09g00343 . 238 629 IQD Protein Family AT2G26180 58.9 2.3e-98 356.7
Cmo07g00202 . 1 279 IQD Protein Family AT2G33990 51.6 6.3e-65 245.0
Cmo16g00447 . 109 292 IQD Protein Family AT2G33990 53.5 8.2e-49 191.4
Cmo07g00202 . 1 253 IQD Protein Family AT3G15050 51.4 7.8e-60 228.0
Cmo16g00447 . 65 285 IQD Protein Family AT3G15050 52.4 1.1e-53 207.6
Cmo15g00857 . 123 458 IQD Protein Family AT5G13460 52.4 1.3e-75 281.2
Cmo06g00970 . 1 500 IQD Protein Family AT4G00820 56.1 1.2e-126 451.1
Cmo06g00970 . 1 500 IQD Protein Family AT1G01110 52.3 1.6e-123 440.7
Cmo08g00706 CCT,CST,ECH 1 397 IQD Protein Family AT3G16490 52.3 3.2e-73 273.1
Cmo11g00664 CST 1 382 IQD Protein Family AT3G16490 51.6 8.9e-68 255.0
Cmo10g00702 CST 1 376 IQD Protein Family AT3G16490 51.5 7.8e-64 241.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00970 Cmo_Chr06 FPKM 7.015119 7.277818 9.13162 9.237149 5.498864 5.401638 4.955339 15.228585 16.325792 13.630123