Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00979 ATGATGAATTTCAAGCATTCCCTTTTCTTTGCTACCCTTCTTTCTCTTTCACTTACTCCTTGTTTTTGCTTCAATCCCAAATCCCTTAATCTCTCCAACTATGAGTCCTACGATTCTAATTCCGGCTGGTCCCCGGCCGTCGCCACCTGGTACGGCAGCCCTGTCGGCGCCGGGAGCGACGGAGGTGCGTGTGGGTATGGAAGCGCGGTGGGGAAACCACCATTCTCGTCGTTGATTGCGGCGGGAGGCCCTTCCTTGTTCAAATCCGGCAAGGGCTGTGGTGCTTGTTATCAAGTGAAGTGCTCGGTAAAGGGCGCGTGCTCCCGGAATCCGGTGACGGTGGTTATAACTGACAGTTGTCCTGGCGGTTCCTGTGCTTCCGACGCTGTCCATTTCGATCTCAGCGGCACTGCTTTTGGTGCTATGGCTGTTTCTCGTCGTGCCGATGAGCTCCGCAATCTTGGCGTACTGCAGATTCAATATAAAAGGGTGGAATGCAAATATGGTGGAACTTCGATCCAGTTCGTGGTGGATGCAGGGTCGAACCCAAACTATTTTGCAACTTTGATCGAATACGAAAATGGAGATGGAGTTCTTGGTTCAGTGGAGTTGAAACAAGCGCAGGGCTCGGGTCCATGGATTCCCATGAAGCAGTCATGGGGTGCAGTTTGGAAGCTGGACTATGGCTCCGCCCTCAAGGCTCCCTTCTCTTTCAGGCTCACTGCCCTGGAATCCAGGAAAGCCGTGGTGGCTAACAACGTGATTCCGGCAGGGTGGCAGCCGGGGAAGACTTATAGATCAGTGGTCAACTTCAAGGCTTAG 822 53.04 MMNFKHSLFFATLLSLSLTPCFCFNPKSLNLSNYESYDSNSGWSPAVATWYGSPVGAGSDGGACGYGSAVGKPPFSSLIAAGGPSLFKSGKGCGACYQVKCSVKGACSRNPVTVVITDSCPGGSCASDAVHFDLSGTAFGAMAVSRRADELRNLGVLQIQYKRVECKYGGTSIQFVVDAGSNPNYFATLIEYENGDGVLGSVELKQAQGSGPWIPMKQSWGAVWKLDYGSALKAPFSFRLTALESRKAVVANNVIPAGWQPGKTYRSVVNFKA 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7713997 7715873 - CmoCh06G009790.1 Cmo06g00979 384541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00979 273 SMART dpbb_1 79 161 IPR007112 -
Cmo06g00979 273 Pfam Expansin C-terminal domain 173 256 IPR007117 -
Cmo06g00979 273 PANTHER EXPANSIN-B3 9 272 - -
Cmo06g00979 273 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 267 IPR007117 -
Cmo06g00979 273 Gene3D - 168 272 IPR036749 -
Cmo06g00979 273 PRINTS Major pollen allergen Lol pI signature 81 92 IPR005795 GO:0005576|GO:0019953
Cmo06g00979 273 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576|GO:0019953
Cmo06g00979 273 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Cmo06g00979 273 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Cmo06g00979 273 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Cmo06g00979 273 PRINTS Major pollen allergen Lol pI signature 222 239 IPR005795 GO:0005576|GO:0019953
Cmo06g00979 273 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 61 171 IPR007112 -
Cmo06g00979 273 PANTHER EXPANSIN-B2-RELATED 9 272 - -
Cmo06g00979 273 SUPERFAMILY Barwin-like endoglucanases 42 191 IPR036908 -
Cmo06g00979 273 Gene3D - 26 167 IPR036908 -
Cmo06g00979 273 SUPERFAMILY PHL pollen allergen 172 267 IPR036749 -
Cmo06g00979 273 Pfam Lytic transglycolase 80 161 IPR009009 -
Cmo06g00979 273 PRINTS Expansin/Lol pI family signature 42 57 IPR007118 GO:0005576
Cmo06g00979 273 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cmo06g00979 273 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Cmo06g00979 273 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Cmo06g00979 273 PRINTS Expansin/Lol pI family signature 213 227 IPR007118 GO:0005576
Cmo06g00979 273 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00105 Cmo-Chr2:562403 Cmo06g00979 Cmo-Chr6:7713997 6.65E-79 dispersed
Cmo06g00979 Cmo-Chr6:7713997 Cmo11g01949 Cmo-Chr11:13441695 1.76E-79 dispersed
Cmo14g02227 Cmo-Chr14:15798088 Cmo06g00979 Cmo-Chr6:7713997 4.42E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00979 - - cpep:111800083 532.332