Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01004 ATGAGCGGGAGCGACGACGAGTTATGTCTCAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCGAGTTTCATCCACAGGCCTTCCAACTCCATGATTAATCACCTCCGTAGGAGCTCTTGGAAAGATGCGTTTCAAGTTTCTGATCGAAACGTCGATTCGAGGTCGTTTCTTAGGGGAATCGATGTGAATAGGCTGAGGACGGCGGTGGATGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGGTTTCTAGTATCAGCGGAAAGAGGAGCGAGAGAGAAGCCGTTGGAGATGAGGCGGAGGCCGAGAGAACCTCGTGCTCGCGAGGGAGCGACGATGAAGACGGCGGCGATGGTGACGGCGACGCCTCGAGAAAGAAGCTCAGGTTATCGAAGGAACAGTCGTTGGTTCTTGAGGAGACGTTCAAAGAGCACAACACGCTCAATCCAAAGCAAAAGCTGGCTCTTGCAAAACGGCTGAGTCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAGGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGGGCACTCAAGCTTTCTCCGCAGCTCTATATGCACATGAACCCTCCTACCACTCTCACTATGTGCCCGCAGTGTGAGCGTGTGGCGGTTTCCTCGTTCTCGTCGACGTCAGCTGCTTCGACTCGCCATCCAGTAGCAGCTGGAATGCAGCAGCGACCCTCGATGCCCATTGCCCCGCAGGCGGTGTTGCCGATCCAACGTTGA 843 53.14 MSGSDDELCLSLSLGFGVTTQPSFIHRPSNSMINHLRRSSWKDAFQVSDRNVDSRSFLRGIDVNRLRTAVDGEEENGVSSPNSTVSSISGKRSEREAVGDEAEAERTSCSRGSDDEDGGDGDGDASRKKLRLSKEQSLVLEETFKEHNTLNPKQKLALAKRLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSFSSTSAASTRHPVAAGMQQRPSMPIAPQAVLPIQR 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7884147 7886274 + CmoCh06G010040.1 Cmo06g01004 384566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01004 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 3 275 - -
Cmo06g01004 280 Pfam HD-ZIP protein N terminus 1 96 IPR006712 GO:0005634
Cmo06g01004 280 MobiDBLite consensus disorder prediction 75 91 - -
Cmo06g01004 280 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Cmo06g01004 280 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Cmo06g01004 280 MobiDBLite consensus disorder prediction 93 130 - -
Cmo06g01004 280 Gene3D - 119 188 - -
Cmo06g01004 280 Coils Coil 189 219 - -
Cmo06g01004 280 SUPERFAMILY Homeodomain-like 112 184 IPR009057 -
Cmo06g01004 280 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Cmo06g01004 280 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Cmo06g01004 280 PANTHER - 3 275 - -
Cmo06g01004 280 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Cmo06g01004 280 MobiDBLite consensus disorder prediction 71 130 - -
Cmo06g01004 280 CDD homeodomain 127 184 IPR001356 GO:0003677
Cmo06g01004 280 SMART HOX_1 125 187 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01004 Cmo17g00057 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00819 Cmo-Chr6:4449890 Cmo06g01004 Cmo-Chr6:7884147 2.69E-37 dispersed
Cmo06g01004 Cmo-Chr6:7884147 Cmo16g01173 Cmo-Chr16:8354962 8.24E-105 dispersed
Cmo14g02213 Cmo-Chr14:15730305 Cmo06g01004 Cmo-Chr6:7884147 1.69E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9993 PF04618 HD-ZIP_N 6.90E-27 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01004 K09338 - csv:101222132 411.764