Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01011 ATGAGCGTGAAAACCCCGGCGACGAGGACTCGCGTTGGCAAGTACGAGCTCGGTAAAACCCTTGGCGAGGGCTCTTTTGCGAAGGTCAAGTTCGCCAAGAACATTGAGAATGGTGATTGTGTCGCCATCAAGATTCTTGATCGTGAACAAGTCCTTCGACACAAGATGGTCGAACAGATTAAAAGAGAGATATCGACTCTGAAAGTGATTAAGCATCCAAATGTTGTTCAGATATATGAGGTTATGGCAAGCAAATCGAAAATCTACATTGTTCTTGAGTTTGTAGAGGGAGGCGAGCTCTTTGACAAAATTGCTACAAAGGGAAGGCTTAAAGAGGACGAGGCAAGGAAATATTTCCATCAACTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATTTGAAGCCTGAAAATCTTCTTCTCGACTCGCATGGTGTTCTTAAAGTATCAGATTTCGGATTGAGTGCATTCTCGCAGCAAGTTCATGGGGATGGTCTTCTTCACACTGCCTGTGGGACTCCAAACTATGTAGCGCCCGAGGTCTTCCATGATAAAGGTTATGATGGTCAATCATCTGATGTTTGGTCATGTGGGGTTATTCTCTTCGTTCTTATGGCTGGCTTCTTGCCTTTCAGCGAGTCAAATCTAACGCATTTGTATCGAAAAATTTCCAGGGCTGATTTCTGCTTTCCGTCGTGGTTCTCAAATGGTGCTAGAAAACTAGTTCGTCGCATTCTCGATCCAAACCCTCTTACTCGAATAACGATAGCCGAAATTCAACAAGATGAATGGTTCAAGAAGGGCTACACACCCACCCACTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTCGATGCTGCTTTTAGCAGCTCGAGGGAACATCTTTTGACCGAAAAGAAAGAGAAACCGGTGTCGATGAATGCTTTTGAGCTTATCTCTAGGTCTCCGGGTTTCAGTCTTGAAAATCTATTTGAGAAGCAGAAGGCTGTTGCAAAGAGAGAAACCCAGTTTACTTCACAGAGCCCTGCAAACGAGATCATGTCGAAGATCGAAGAAACTGCAAAACCTATGGGGTTCAATATTAAAAAACGGGACTACAAGATGAAGCTGCAAGGTGACAAGACTGGGAGGAAAGGACACCTCTCCATAGCTACTGAGGTGTTCGAGGTGGCTCCTTCCTTGCATATGGTGGAGCTCCGAAAAACTGGTGGCGATACGCTCGAGTTTATCAAGTTCTACAAAAGCTTCTCATCAGGATTAAAAGATATAATGTGGAGAACTGATGGAAATACTGTAGAAGGGAGCTAA 1326 44.12 MSVKTPATRTRVGKYELGKTLGEGSFAKVKFAKNIENGDCVAIKILDREQVLRHKMVEQIKREISTLKVIKHPNVVQIYEVMASKSKIYIVLEFVEGGELFDKIATKGRLKEDEARKYFHQLINAVDYCHSRGVYHRDLKPENLLLDSHGVLKVSDFGLSAFSQQVHGDGLLHTACGTPNYVAPEVFHDKGYDGQSSDVWSCGVILFVLMAGFLPFSESNLTHLYRKISRADFCFPSWFSNGARKLVRRILDPNPLTRITIAEIQQDEWFKKGYTPTHFEVEEDITLDDVDAAFSSSREHLLTEKKEKPVSMNAFELISRSPGFSLENLFEKQKAVAKRETQFTSQSPANEIMSKIEETAKPMGFNIKKRDYKMKLQGDKTGRKGHLSIATEVFEVAPSLHMVELRKTGGDTLEFIKFYKSFSSGLKDIMWRTDGNTVEGS 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7945376 7949863 - CmoCh06G010110.1 Cmo06g01011 384573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01011 441 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01011 441 CDD STKc_SnRK3 14 269 - -
Cmo06g01011 441 Gene3D Transferase(Phosphotransferase) domain 1 95 276 - -
Cmo06g01011 441 Gene3D Kinase associated domain 1, KA1 306 432 - -
Cmo06g01011 441 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01011 441 CDD CIPK_C 313 428 - -
Cmo06g01011 441 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Cmo06g01011 441 PANTHER - 7 434 - -
Cmo06g01011 441 SUPERFAMILY Protein kinase-like (PK-like) 12 298 IPR011009 -
Cmo06g01011 441 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01011 441 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Cmo06g01011 441 Pfam NAF domain 309 369 IPR004041 GO:0007165
Cmo06g01011 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Cmo06g01011 441 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Cmo06g01011 441 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 7 434 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01011 Cmo14g02202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01223 Cmo-Chr2:7357307 Cmo06g01011 Cmo-Chr6:7945376 0 dispersed
Cmo03g01419 Cmo-Chr3:10261849 Cmo06g01011 Cmo-Chr6:7945376 0 dispersed
Cmo06g01011 Cmo-Chr6:7945376 Cmo13g00546 Cmo-Chr13:6316667 0 dispersed
Cmo14g02202 Cmo-Chr14:15688817 Cmo06g01011 Cmo-Chr6:7945376 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74421 PF00069 Pkinase 9.70E-73 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01011 - - csv:101203531 798.505