Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01033 | ATGAAGATTGAAGATGGGTTGCGGGGTGTGGGTGGGAAGGATGAGGATAAGACTGTGGTGGCTGCTGTTTTGGGTACTCGTGCTTTTAATTACATGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGATGATAATTTGCAGAACAAGCTTGCGGATCTGGTAGAGACACCCAACGCTTCTAATTTTTGTTGGAATTATGCAATTTTCTGGCAACTTTCCCATTCAAAATCTGGTCAATGGGTTTTGGGATGGGGAGATGGATCGTTTAGGGATCCTAGGGATGGTGAAGGAACTGAAGCTACGCAGATTCTTAGCCTTGAGCTTGAAGATGAGAGCCAACAAAGGATGAAGAAAAGGGCATTGCAGAAGCTTCATACACTGTTTGGTGGGTCTGATGAGGATAATTATGCTCTTGGATTGGATAGAGTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTACTTCTCCTTTCCTGGTGGAGAGGGGGGTCCTGGGAAGTGTTTCGCTTCTGGGAAACATGTCTGGCATTTGGATGTGCTCAATTCGCCTGCTGAGTATTGTGTGAGGTCCTATCTGGCTAAGTCGGCTGGGATTCGGACCGTCGTTTTGGTGCCAACTGATGTTGGAGTAGTTGAATTGGGTTCTGTGAGATCTGTGAGTGAGAGCTTAGAGTTGGTGCATTTGATTCGATCGTTGTTTTCATCTCAACGTTCGCTTGATGGAGTGAGGACATCAGCTGTGATGTCGAGGATGGCTGAAAGGAAGGATGAAAACGCCCTGTTTCCAAGTTTGGGGATTGCAGAAAGAGGAGGAGGGGGGGTTCCTAAGGTTTTTGGGCAGAGTTTGAACTCGGGGAACGTGGGTCGATCTCATTTCCGAGAGAAACTGGCGGTTAGGAAGATGGATGAAAGGGCATGGGAAGTATGTCCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCATTCGTAATCCGAGTTTGGGGCATGTTCATCTTCTCAAACCGGGGAATCCTACCGAAACTTTAGGCTCTCCAACTCCACCGGTAAATAATAATCACGAGCAGCTTGTCAATGGAGTTAGAGATGAATTTTGTCTCAATCCCTATCAATCACAGAAGATAGCCCAAATGCAAATCGATTTCTCTGTAGCAACACCAAGGCCGCCTTCTGTGATGAACCGTGTAGGTGCAGATTCTGAACAATTAGATATAGAGCCTCAATGCAAAGAAGAGGGACCTGGCACCGACGAAAGACGACCACGCAAACGAGGCAGAAAGCCTGCAAATGGAAGGGAGGAACCACTAAATCACGTGGAGGCAGAGAGGCAGCGTCGTGAGAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTACCCAATATCTCGAAGATGGACAAAGCTTCACTGCTAGGAGATGCCATTGCTTACATTAATGAGCTTCAGTCTAAAGTGAAAGCCATGGAATATGAAAGGGAGCAATCCGGCGTCACCTCAAGTGAAGCAACCCCTTCGGAAACGAACCCAGAAATTGAAAACAAAGATCAATTCCTTGACGTTGACATCGACGTCGAAGCAGGTAATGACGAAGTCGTCGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAATGTTGTTGATTCAAAACTGTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACGAAGGAAGAGTTGATAGCCACAATTTCGCGGGATTCAACTCCGTTACATCCTCTATCAACAGTTGGGTAG | 1854 | 46.06 | MKIEDGLRGVGGKDEDKTVVAAVLGTRAFNYMMSCSVSNENLFMAVRNDDNLQNKLADLVETPNASNFCWNYAIFWQLSHSKSGQWVLGWGDGSFRDPRDGEGTEATQILSLELEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPGGEGGPGKCFASGKHVWHLDVLNSPAEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVHLIRSLFSSQRSLDGVRTSAVMSRMAERKDENALFPSLGIAERGGGGVPKVFGQSLNSGNVGRSHFREKLAVRKMDERAWEVCPNGGRIQFQSPRNGIRNPSLGHVHLLKPGNPTETLGSPTPPVNNNHEQLVNGVRDEFCLNPYQSQKIAQMQIDFSVATPRPPSVMNRVGADSEQLDIEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQSKVKAMEYEREQSGVTSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVVVKVSCPLESHPASRVIKAMKNAQINVVDSKLSVEVNDTVLHTFTIKSPGSEQLTKEELIATISRDSTPLHPLSTVG | 617 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8075295 | 8077148 | + | CmoCh06G010330.1 | Cmo06g01033 | 384595 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01033 | 617 | MobiDBLite | consensus disorder prediction | 342 | 361 | - | - | |
Cmo06g01033 | 617 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 52 | 240 | IPR025610 | - | |
Cmo06g01033 | 617 | MobiDBLite | consensus disorder prediction | 412 | 452 | - | - | |
Cmo06g01033 | 617 | CDD | bHLH_AtAIB_like | 438 | 511 | - | - | |
Cmo06g01033 | 617 | PANTHER | TRANSCRIPTION FACTOR MTB1 | 13 | 611 | - | - | |
Cmo06g01033 | 617 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 444 | 506 | IPR036638 | GO:0046983 | |
Cmo06g01033 | 617 | SMART | finulus | 447 | 496 | IPR011598 | GO:0046983 | |
Cmo06g01033 | 617 | MobiDBLite | consensus disorder prediction | 501 | 520 | - | - | |
Cmo06g01033 | 617 | PANTHER | MYC | 13 | 611 | IPR045084 | GO:0003700|GO:0006355 | |
Cmo06g01033 | 617 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 441 | 490 | IPR011598 | GO:0046983 | |
Cmo06g01033 | 617 | Pfam | Helix-loop-helix DNA-binding domain | 445 | 491 | IPR011598 | GO:0046983 | |
Cmo06g01033 | 617 | MobiDBLite | consensus disorder prediction | 399 | 452 | - | - | |
Cmo06g01033 | 617 | Gene3D | - | 434 | 505 | IPR036638 | GO:0046983 | |
Cmo06g01033 | 617 | MobiDBLite | consensus disorder prediction | 502 | 520 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g01033 | Cmo14g02175 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01033 | Cmo-Chr6:8075295 | Cmo19g00079 | Cmo-Chr19:435281 | 7.52E-100 | dispersed | |
Cmo19g00076 | Cmo-Chr19:422178 | Cmo06g01033 | Cmo-Chr6:8075295 | 1.00E-24 | dispersed | |
Cmo14g02175 | Cmo-Chr14:15597259 | Cmo06g01033 | Cmo-Chr6:8075295 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9994 | PF14215 | bHLH-MYC_N | 3.50E-52 | CL0161 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01033 | - | - | csv:101208845 | 1042.72 |