Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01033 ATGAAGATTGAAGATGGGTTGCGGGGTGTGGGTGGGAAGGATGAGGATAAGACTGTGGTGGCTGCTGTTTTGGGTACTCGTGCTTTTAATTACATGATGTCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCTGTGAGGAATGATGATAATTTGCAGAACAAGCTTGCGGATCTGGTAGAGACACCCAACGCTTCTAATTTTTGTTGGAATTATGCAATTTTCTGGCAACTTTCCCATTCAAAATCTGGTCAATGGGTTTTGGGATGGGGAGATGGATCGTTTAGGGATCCTAGGGATGGTGAAGGAACTGAAGCTACGCAGATTCTTAGCCTTGAGCTTGAAGATGAGAGCCAACAAAGGATGAAGAAAAGGGCATTGCAGAAGCTTCATACACTGTTTGGTGGGTCTGATGAGGATAATTATGCTCTTGGATTGGATAGAGTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTACTTCTCCTTTCCTGGTGGAGAGGGGGGTCCTGGGAAGTGTTTCGCTTCTGGGAAACATGTCTGGCATTTGGATGTGCTCAATTCGCCTGCTGAGTATTGTGTGAGGTCCTATCTGGCTAAGTCGGCTGGGATTCGGACCGTCGTTTTGGTGCCAACTGATGTTGGAGTAGTTGAATTGGGTTCTGTGAGATCTGTGAGTGAGAGCTTAGAGTTGGTGCATTTGATTCGATCGTTGTTTTCATCTCAACGTTCGCTTGATGGAGTGAGGACATCAGCTGTGATGTCGAGGATGGCTGAAAGGAAGGATGAAAACGCCCTGTTTCCAAGTTTGGGGATTGCAGAAAGAGGAGGAGGGGGGGTTCCTAAGGTTTTTGGGCAGAGTTTGAACTCGGGGAACGTGGGTCGATCTCATTTCCGAGAGAAACTGGCGGTTAGGAAGATGGATGAAAGGGCATGGGAAGTATGTCCCAATGGAGGTAGAATTCAGTTTCAAAGCCCTCGAAATGGCATTCGTAATCCGAGTTTGGGGCATGTTCATCTTCTCAAACCGGGGAATCCTACCGAAACTTTAGGCTCTCCAACTCCACCGGTAAATAATAATCACGAGCAGCTTGTCAATGGAGTTAGAGATGAATTTTGTCTCAATCCCTATCAATCACAGAAGATAGCCCAAATGCAAATCGATTTCTCTGTAGCAACACCAAGGCCGCCTTCTGTGATGAACCGTGTAGGTGCAGATTCTGAACAATTAGATATAGAGCCTCAATGCAAAGAAGAGGGACCTGGCACCGACGAAAGACGACCACGCAAACGAGGCAGAAAGCCTGCAAATGGAAGGGAGGAACCACTAAATCACGTGGAGGCAGAGAGGCAGCGTCGTGAGAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTACCCAATATCTCGAAGATGGACAAAGCTTCACTGCTAGGAGATGCCATTGCTTACATTAATGAGCTTCAGTCTAAAGTGAAAGCCATGGAATATGAAAGGGAGCAATCCGGCGTCACCTCAAGTGAAGCAACCCCTTCGGAAACGAACCCAGAAATTGAAAACAAAGATCAATTCCTTGACGTTGACATCGACGTCGAAGCAGGTAATGACGAAGTCGTCGTTAAGGTTAGCTGCCCATTAGAGTCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAAATGCACAGATCAATGTTGTTGATTCAAAACTGTCTGTTGAAGTAAACGATACAGTTTTGCACACGTTTACGATCAAATCCCCCGGATCGGAGCAGTTGACGAAGGAAGAGTTGATAGCCACAATTTCGCGGGATTCAACTCCGTTACATCCTCTATCAACAGTTGGGTAG 1854 46.06 MKIEDGLRGVGGKDEDKTVVAAVLGTRAFNYMMSCSVSNENLFMAVRNDDNLQNKLADLVETPNASNFCWNYAIFWQLSHSKSGQWVLGWGDGSFRDPRDGEGTEATQILSLELEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPGGEGGPGKCFASGKHVWHLDVLNSPAEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVHLIRSLFSSQRSLDGVRTSAVMSRMAERKDENALFPSLGIAERGGGGVPKVFGQSLNSGNVGRSHFREKLAVRKMDERAWEVCPNGGRIQFQSPRNGIRNPSLGHVHLLKPGNPTETLGSPTPPVNNNHEQLVNGVRDEFCLNPYQSQKIAQMQIDFSVATPRPPSVMNRVGADSEQLDIEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQSKVKAMEYEREQSGVTSSEATPSETNPEIENKDQFLDVDIDVEAGNDEVVVKVSCPLESHPASRVIKAMKNAQINVVDSKLSVEVNDTVLHTFTIKSPGSEQLTKEELIATISRDSTPLHPLSTVG 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8075295 8077148 + CmoCh06G010330.1 Cmo06g01033 384595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01033 617 MobiDBLite consensus disorder prediction 342 361 - -
Cmo06g01033 617 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Cmo06g01033 617 MobiDBLite consensus disorder prediction 412 452 - -
Cmo06g01033 617 CDD bHLH_AtAIB_like 438 511 - -
Cmo06g01033 617 PANTHER TRANSCRIPTION FACTOR MTB1 13 611 - -
Cmo06g01033 617 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 444 506 IPR036638 GO:0046983
Cmo06g01033 617 SMART finulus 447 496 IPR011598 GO:0046983
Cmo06g01033 617 MobiDBLite consensus disorder prediction 501 520 - -
Cmo06g01033 617 PANTHER MYC 13 611 IPR045084 GO:0003700|GO:0006355
Cmo06g01033 617 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 441 490 IPR011598 GO:0046983
Cmo06g01033 617 Pfam Helix-loop-helix DNA-binding domain 445 491 IPR011598 GO:0046983
Cmo06g01033 617 MobiDBLite consensus disorder prediction 399 452 - -
Cmo06g01033 617 Gene3D - 434 505 IPR036638 GO:0046983
Cmo06g01033 617 MobiDBLite consensus disorder prediction 502 520 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01033 Cmo14g02175 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01033 Cmo-Chr6:8075295 Cmo19g00079 Cmo-Chr19:435281 7.52E-100 dispersed
Cmo19g00076 Cmo-Chr19:422178 Cmo06g01033 Cmo-Chr6:8075295 1.00E-24 dispersed
Cmo14g02175 Cmo-Chr14:15597259 Cmo06g01033 Cmo-Chr6:8075295 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9994 PF14215 bHLH-MYC_N 3.50E-52 CL0161 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01033 - - csv:101208845 1042.72