Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01042 ATGTCAAAGTCAAACTCTTGCAAGATCATAGCTAATTTAACTGTCCCAGTTGCGTACCCAGATGAGGCCAATCAGTTTCTAACCGACCACTATGGTGATCTCCTGCTAACTTGGAATAGCCCTGCTTGCAGTATCTGCGAAACAGAAGGCAGGCTTTGTGGGTTCAAAAGCAACAGCGGCCTCGGCATTGCCTGTTTCAATAAGTACTCAACAGGGGAGAATAATGGTCTCAGAATATTGCGGATCATCTGTGTGGTGATTATTCTACCGAGTTTGATGTGTGTCTTTGGATTTGGCTGCTTTATCTGCTTCGCAAGGTGGGGCTATGGCATTGCAGACAGCAGAAGAAACCAAGCTCAGAATCAGCAGCAGGTCAATCCAGCTTTAGAGACAGAGCCACCGATCCGTTTGAGTGGTCTGGACGAATCAACCATTGATTCATATCAGAAGGTAATCCTTGGAGAAAGCCGGCGGCTGCCAGGCCCCAATGGCACCACCTGCCCCATATGCCTTGGAGAGTACTTAACTAAAGACACGGTCAGATGCATTCCTGAGTGCAAGCATTGCTTCCATGTGGATTGTATTGATCAATGGCTTCGTGTCAACAGCAGCTGCCCTCTTTGTCGAAACTCTCCCTCTCCCTCCCCTTCTCACTAA 657 48.1 MSKSNSCKIIANLTVPVAYPDEANQFLTDHYGDLLLTWNSPACSICETEGRLCGFKSNSGLGIACFNKYSTGENNGLRILRIICVVIILPSLMCVFGFGCFICFARWGYGIADSRRNQAQNQQQVNPALETEPPIRLSGLDESTIDSYQKVILGESRRLPGPNGTTCPICLGEYLTKDTVRCIPECKHCFHVDCIDQWLRVNSSCPLCRNSPSPSPSH 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8109911 8111764 + CmoCh06G010420.1 Cmo06g01042 384604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01042 218 SUPERFAMILY RING/U-box 166 212 - -
Cmo06g01042 218 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 3 216 - -
Cmo06g01042 218 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Cmo06g01042 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 214 IPR013083 -
Cmo06g01042 218 SMART ring_2 167 208 IPR001841 -
Cmo06g01042 218 Pfam Ring finger domain 166 209 IPR001841 -
Cmo06g01042 218 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01042 - - - mcha:111016421 355.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01042 Cmo16g00596 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01042 Cmo-Chr6:8109911 Cmo16g00596 Cmo-Chr16:2899336 2.08E-45 dispersed
Cmo06g01042 Cmo-Chr6:8109911 Cmo04g00734 Cmo-Chr4:3649167 1.25E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
Vvi15g727 . . . Bda08g00465 . . . . . . Cma06g01059 . Car06g00858 . Sed02g1748 Cpe08g00590 . Bhi01g00472 Tan10g0126 Cmetu06g1435 . Hepe05g2020 . Lcy11g2045 Cla05g00098 Cam05g0105 Cec05g0101 Cco05g0107 Clacu05g0094 Cmu05g0094 Cre05g0161 . . . . Lsi05g02120 . . Cme06g00101 Blo02g00328 . . . . . Bma02g01099 . . Cmo06g01042 . . . . . . . . . . . . . . . . . . . . . . Csa03g00809 Chy06g00101 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012559 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01042 Cmo_Chr06 FPKM 62.785156 62.211399 34.992077 35.806469 12.848198 15.557466 13.739742 16.787291 15.368254 16.071827
Cmo06g01042 Cmo_Chr00 FPKM 37.982189 37.527512 12.201231 12.568877 4.76583 3.531367 5.943141 4.187578 5.377214 4.451985
Cmo06g01042 Cmo_Chr00 FPKM 50.234074 51.550686 33.777603 32.350029 12.567908 14.675351 11.827648 11.874585 13.642989 12.946815