Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01044 ATGCAAGTGACCATATTTATGGGTTCCCAGATACCAAAAACTGTAAGGTTTGGACAACCAACTTCTGACTTCCATGACAGATATGGAGGCTACCAAAACAGAAGCAGACTGTCTCCAAGCTCAATGTTGGAATGCTTACACAGAGGATTAACACAAATAGGCTTCAAACCAGAATTTTGGAAGAAAATTCTTGATCCACAGAAGTCATTTCTTCAGCAATGGAACAAGATATTTGTGCTGTCCTCTGTCATAGCAGTAGCTGTGGACCCTCTCTTCTTCTACGTCCCAGTATTTGATAAAGACCGTCAATGCCTAACCATGGACCAAGATCTTATGACCATTACTTGTGTTCTTCGTTCATTCATTGACTTGTTTTATCTACTTCACATGATCTTTGAGTTTCGAACTGGTTTTCTTCCCCCTTCTTTGCCTGTGTTTGGAAGTGGTGAATTAATTGAAGACCCAGCAGCTATAGCAAAGAGATATCTTTTCTCAAACTTCTTGATTGATATCTTATCCATTCTCCCACTGCCTCAGCTTTTGGTATTAGTAATCATACCTGCAGCGAAAGATCCAATTCCAACAAAGACAGAGAACATCGTGAAGATTGCGGTTCTTTTGCAGTATATTCCTAGGCTTCTTCGAATTTATCCACTATACAGAGAAGTAACCAAAAACTCTGGCATACTGACAGAAACTGCTTGGAGTGGAGCTGCCTTCAATCTTCTTATTTATTTGCAAGCTTGTCATGTTGTTGGTGCCATTTGGTATTTGTTATCAATAGAACGCCAAACCAAATGCTGGCTTGTGGCATGCATGAAAGATGACTGTACAGACAATTTTTTGTACTGTGAACGTCGTAGTAAACCAATGTCCTCTTCTACAATCAAGTTTTGCTCTCCTAAGAAATCTAAAGATGACAAGACAAAGACCTTCGACTTTGGGATGTATGCTAAAGCCCTTGAGTTTGACTTTACCAAGACGAGTTTTCGCCACAAATTCTTCTATTCATTCTGGTGGGCTCTGCAAAATGTCAGCTCAAGTGGACAAAACCTTAAAGTAAGCAACTACATGGGGGAGGTTCTTTTTGCTGTCTTCATAGCCATCCTTGGTTTGGTTTTATTTGCCTTACTCATTAGCAATGTTCAGAAATACCTTCAGTCAACAACTGTTAAAATAGAGCAGATGAGAATCAACCGACGAGATATCGAGCATTGGATGGCACATCGTATGCTCCCGGAGGACTTAAGGCAGCGTATTAGACGATACGATCAATACAAATGGCAGCTAAATAGAGGAGTTAAGGAAGAGGAACTCATTACTAACCTTCCTAAAGACCTTAGGAAAGACATCAAACGCCATCTTTGCTTGTCCCTTCTTAAAAAAGTGACACTTTTTAGCAACATGGACAAGCATCTACTAGACTCGATGTGCGAATATCTCAAGCCAGTGTTATTCACAAAGAGGAGCTTCATTCTGCAAGAGGGTGACCCAATTGATATGATGCTATTCATCATGAAAGGAAAGCTAGCTAACATTATAACTTTTGGTTGGAACAACAAGCCTTACACGGACATACTTAAAGCAGGCGACTTCTGTGGTGAAGAGCTAGTTCAATGGGCAATGGATCCAACCTCCACTTCTCTTCCCATTTCAGCTAGAACAGTTGAGTCTCTTACTGAGGTTGAAGCCTTTGCTTTAAAGGCTGATGAGCTGAAATTTGTGACCAGTCAGTTCCATTTCCAGCGCCTTAATAGCAGGCAATTTGAGCACAGAGTGAGATTCTATTCTCATCAATGGAAAGTTTGGGCAGCCTATAAGGTACAAGAAGCTTGGCATGATTACGTTGAAAGAAAGAAGAGAGGGGGTGGAGATGGTAGATTTCAAGATGCATTGGCTAAAACAGTTGGTGTCTCGGCGAGCTTTGGCGCCACTCTATATGCATCCATGTTTATATCATATCTGTTGCTTGCTGTGCAGCGTGATCAGCACCAGAAAACTGCTCCTTTCACACGAGTGATGACGCTACCGCCGCCTCGGAAGCCAGACGATAAGCAAGACGAGCCAAACTTCACCATCTTGAATCGTTAA 2091 41.56 MQVTIFMGSQIPKTVRFGQPTSDFHDRYGGYQNRSRLSPSSMLECLHRGLTQIGFKPEFWKKILDPQKSFLQQWNKIFVLSSVIAVAVDPLFFYVPVFDKDRQCLTMDQDLMTITCVLRSFIDLFYLLHMIFEFRTGFLPPSLPVFGSGELIEDPAAIAKRYLFSNFLIDILSILPLPQLLVLVIIPAAKDPIPTKTENIVKIAVLLQYIPRLLRIYPLYREVTKNSGILTETAWSGAAFNLLIYLQACHVVGAIWYLLSIERQTKCWLVACMKDDCTDNFLYCERRSKPMSSSTIKFCSPKKSKDDKTKTFDFGMYAKALEFDFTKTSFRHKFFYSFWWALQNVSSSGQNLKVSNYMGEVLFAVFIAILGLVLFALLISNVQKYLQSTTVKIEQMRINRRDIEHWMAHRMLPEDLRQRIRRYDQYKWQLNRGVKEEELITNLPKDLRKDIKRHLCLSLLKKVTLFSNMDKHLLDSMCEYLKPVLFTKRSFILQEGDPIDMMLFIMKGKLANIITFGWNNKPYTDILKAGDFCGEELVQWAMDPTSTSLPISARTVESLTEVEAFALKADELKFVTSQFHFQRLNSRQFEHRVRFYSHQWKVWAAYKVQEAWHDYVERKKRGGGDGRFQDALAKTVGVSASFGATLYASMFISYLLLAVQRDQHQKTAPFTRVMTLPPPRKPDDKQDEPNFTILNR 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8113022 8117806 - CmoCh06G010440.1 Cmo06g01044 384606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01044 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 1 59 692 - -
Cmo06g01044 696 SMART cnmp_10 465 594 IPR000595 -
Cmo06g01044 696 Gene3D - 76 386 - -
Cmo06g01044 696 SUPERFAMILY Voltage-gated potassium channels 66 387 - -
Cmo06g01044 696 Gene3D Helix hairpin bin 387 456 - -
Cmo06g01044 696 Gene3D Jelly Rolls 463 580 IPR014710 -
Cmo06g01044 696 Pfam Ion transport protein 73 391 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo06g01044 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 59 692 - -
Cmo06g01044 696 ProSiteProfiles cAMP/cGMP binding motif profile. 465 549 IPR000595 -
Cmo06g01044 696 CDD CAP_ED 465 596 IPR000595 -
Cmo06g01044 696 MobiDBLite consensus disorder prediction 673 696 - -
Cmo06g01044 696 SUPERFAMILY cAMP-binding domain-like 395 579 IPR018490 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01044 Cmo14g02168 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01044 Cmo-Chr6:8113022 Cmo05g01050 Cmo-Chr5:8475255 0 dispersed
Cmo14g02168 Cmo-Chr14:15560949 Cmo06g01044 Cmo-Chr6:8113022 0 wgd
Cmo02g01137 Cmo-Chr2:6889071 Cmo06g01044 Cmo-Chr6:8113022 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01044 K05391 - csv:101206492 994.571