Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01046 ATGAACGACGACGATCCATGTGGAGTTATGGACGCTCAGTACATACGCAGGCATCACCGTCACCATCCCAAAGAGAATCAGTGTACATCGGTTGTTTTCAAGAACGTCAGAGCTCCGGTTCCTCTTGTGAGTTGTTCTTCCGATCCGAAATCCTACTGTTCTTTTCATTTTGTCAACGCTCCAGCTCCTGTGCTCTGGATTGATTTTTCTGATGTTTTATGGGGATCGTGGAGTTTGTTTCCATTGGTTTGGTCACTGGTGAGGCGATTTGATCAGCCCCAGAAGTATAAGCCTTTTGTTAGTCGTTGTGTAGTGAAAGGAGATCTGGGCATTGGAAGTGTCAGGGAAGTGAATGTGAAATCTGGTCTTCCTGCGACCACCAGTACTGAGAGGTTGGAGCTTCTCGACGATGAAGAACACATACTCGGAATCAGAATCGTTGGTGGAGATCACAGGCTCAAAAACTACTCTTCCATCATGACTGTCCATCCAAAGGTCATTGATGGAAGACCTGGCACGGTTGTAGTCGAGTCTTTTGTGGTGGATGTGCCTAGCGGGAACACCAAAGATGAGACGTGTTATTTCGTTAAGGCATTAATCAGATGCAATCTTAAATCATTGGCGGATGTATCGGAGAGGATGGCTGTGCAGGGGCAAACTGAACCAATCGAGAAGTAG 678 46.61 MNDDDPCGVMDAQYIRRHHRHHPKENQCTSVVFKNVRAPVPLVSCSSDPKSYCSFHFVNAPAPVLWIDFSDVLWGSWSLFPLVWSLVRRFDQPQKYKPFVSRCVVKGDLGIGSVREVNVKSGLPATTSTERLELLDDEEHILGIRIVGGDHRLKNYSSIMTVHPKVIDGRPGTVVVESFVVDVPSGNTKDETCYFVKALIRCNLKSLADVSERMAVQGQTEPIEK 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8136944 8138798 + CmoCh06G010460.1 Cmo06g01046 384608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01046 225 CDD PYR_PYL_RCAR_like 83 212 - -
Cmo06g01046 225 PANTHER - 82 223 - -
Cmo06g01046 225 PANTHER - 8 43 - -
Cmo06g01046 225 Gene3D - 9 223 IPR023393 -
Cmo06g01046 225 Pfam Polyketide cyclase / dehydrase and lipid transport 83 212 IPR019587 -
Cmo06g01046 225 SUPERFAMILY Bet v1-like 82 210 - -
Cmo06g01046 225 PANTHER ABSCISIC ACID RECEPTOR PYL3-LIKE 82 223 - -
Cmo06g01046 225 PANTHER ABSCISIC ACID RECEPTOR PYL3-LIKE 8 43 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01046 K14496 PYL; abscisic acid receptor PYR/PYL family - csv:101211059 343.199
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01046 Cmo15g01095 CCT
Cmo06g01046 Cmo08g00128 CCT
Cmo02g01134 Cmo06g01046 CCT
Cmo06g01046 Cmo08g00128 ECH
Cmo02g01134 Cmo06g01046 ECH
Cmo06g01046 Cmo15g01095 ECH
Cmo06g01046 Cmo14g02166 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01046 Cmo-Chr6:8136944 Cmo08g00128 Cmo-Chr8:666019 3.08E-83 dispersed
Cmo14g02166 Cmo-Chr14:15546239 Cmo06g01046 Cmo-Chr6:8136944 3.69E-117 wgd
Cmo16g00072 Cmo-Chr16:330817 Cmo06g01046 Cmo-Chr6:8136944 1.82E-80 wgd
Cmo02g01134 Cmo-Chr2:6871587 Cmo06g01046 Cmo-Chr6:8136944 3.56E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g124 . . . . . . . . Cmo06g01046 . . . . . . . Cpe05g00609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g01134 Cmo15g01095 . . Car06g00862 . . . . . . . . . . . . . . . . . . . . .
Vvi15g739 . . . . . . . . Cmo08g00128 . Cma06g01053 Cma14g02101 Car06g00862 Car14g01906 . Cpe08g00587 Cpe03g01784 Bhi01g00464 Tan10g0134 . . Hepe05g2015 . Lcy11g2041 Cla05g00105 Cam05g0114 Cec05g0111 Cco05g0118 Clacu05g0106 Cmu05g0105 Cre05g0169 Cone14ag0029 Cone15ag0031 Cone11ag0486 Cone18ag1019 Lsi05g02112 . . Cme06g00106 Blo02g00330 . Bda11g00214 Bda13g00382 Bpe13g00982 . Bma02g01095 Bma06g01158 . Cmo06g01046 Cmo14g02166 Cma08g00120 . . . Cpe17g01026 . . . . . . . . . . . . . . . . Csa03g00814 Chy06g00106 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000330 3 6 1 3 1 4 8 4 4 4 3 4 8 4 5 7 4 10 8 4 4 4 3 4 4 3 3 8 6 3 137
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01046 Cmo_Chr06 FPKM 0.432203 0.813972 9.264689 8.106886 1.452637 2.359132 2.13482 2.653121 2.743408 2.672331
Cmo06g01046 Cmo_Chr00 FPKM 0.545605 0.691641 8.069793 8.498933 1.238395 1.860251 2.014949 2.415939 2.628881 2.374763
Cmo06g01046 Cmo_Chr00 FPKM 0.0 0.0 1.28675 3.297886 0.570402 0.0 0.408649 0.0 0.0 0.0