Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01049 ATGGAACACAAGAGTTTGATCACCGAGTTGACTCAGGGGAAGGAGATGGCGATTCAACTCAAAACCCACCTTCCTTCTCCTCCTCCTCTTGGTTCTTCTCCACAAGCTCTCATTTTCTTGACGGAAATGATTCAGTCTTCTTTCGAGAATGCACTTTTGCTTCTGAATTGGAACCCTAAAGATCCATCCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCCACCAAGAACAAGAGGAAAAACAGCACCAGAGATGTGCTGCTCAAGAGGAGAAAGTTGCTGCCTAAATGGACAGAGGAAGTTAAGGTTAGCAGTGGCACTGCTGCTGAAGGCCCACTCAATGATGGCTATAGTTGGAGAAAATACGGCCAAAAAGATATCCATGGCGCTAACTTTCCAAGATGCTATTATAGATGCACTCATCGGAATGTACGAGGATGTTTGGCCACAAAACAAGTTCAGAAATCCGACAACGATCCCAACATTTTCGAGGTGACATACAGAGGACGACACACATGTAACCAATCCGCTAATTTGGGATTGATTTCAGTTTCAAATCGGAACGAAATCCCAGAAGAAACCCATCAAAATCAAAAAAACCCAAACTCTGAAATTCTCTTCAATTTCGGAGAACAACAGCATTTCGGTCTAAAAACAGAGGATTTTGACGATGTTTTTCCGCCGTTTAGCTTCGGATCGGAAACTGTCCATGAAAATGTGTTCTTAGAATCAATGATGGAGACGGGTTTTGTTGCGGACGGCAACTGGTCTGCGGCGGCTGTGTCGTCGGCGACGTCGGAAACAGCCTGGGATTTCAGCGGTTACGGCGGAGAAATTCAGGGGGTTCAGTCGTCGGAGCAATCGAACATGACGGAAATGGTTTCGGCGACAACTTCAGTGACGAATTCGCCGATTGGTAATGGGGATTGGGATTTGTCGCTTGATAAGGTTGATTTTGACCAGTTTTTCCTCTTTGACTGTCTGGATTTCATCTCTTGA 999 45.05 MEHKSLITELTQGKEMAIQLKTHLPSPPPLGSSPQALIFLTEMIQSSFENALLLLNWNPKDPSEEEEEEEEEEPTKNKRKNSTRDVLLKRRKLLPKWTEEVKVSSGTAAEGPLNDGYSWRKYGQKDIHGANFPRCYYRCTHRNVRGCLATKQVQKSDNDPNIFEVTYRGRHTCNQSANLGLISVSNRNEIPEETHQNQKNPNSEILFNFGEQQHFGLKTEDFDDVFPPFSFGSETVHENVFLESMMETGFVADGNWSAAAVSSATSETAWDFSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSPIGNGDWDLSLDKVDFDQFFLFDCLDFIS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8163263 8164782 + CmoCh06G010490.1 Cmo06g01049 384611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01049 332 SUPERFAMILY WRKY DNA-binding domain 111 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g01049 332 Gene3D WRKY domain 99 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g01049 332 ProSiteProfiles WRKY domain profile. 108 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g01049 332 MobiDBLite consensus disorder prediction 60 84 - -
Cmo06g01049 332 SMART WRKY_cls 113 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g01049 332 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 2 326 - -
Cmo06g01049 332 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 326 IPR044810 GO:0003700
Cmo06g01049 332 Pfam WRKY DNA -binding domain 114 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01049 - - - cmax:111473324 597.816
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01049 Cmo08g00125 CCT
Cmo06g01049 Cmo08g00125 ECH
Cmo06g01049 Cmo16g00604 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01049 Cmo-Chr6:8163263 Cmo14g02163 Cmo-Chr14:15533323 3.89E-138 dispersed
Cmo16g00074 Cmo-Chr16:340544 Cmo06g01049 Cmo-Chr6:8163263 1.34E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g118 Blo02g01144 . . Bda08g00475 Bpe05g00686 Bpe07g00075 . Bma14g00630 Cmo06g01049 Cmo16g00604 . . . . . Cpe14g00467 . . . . . . . . Cla07g01418 Cam07g1519 Cec07g1615 Cco07g1575 Clacu07g1507 Cmu07g1477 Cre07g1854 . . Cone6ag0843 Cone9ag0840 . . . . . . Bda07g00461 . . . Bma05g00868 Bma12g00606 . . . . Cma16g00553 Car06g00866 . . . . . . . . . . . . . . . . . . Csa04g00648 Chy07g01162 .
Vvi15g747 Blo01g00236 Blo12g00229 Bda03g01007 Bda08g00475 Bpe14g00952 Bpe05g01022 Bma04g00904 . Cmo08g00125 . Cma06g01049 Cma14g02098 . Car14g01903 Sed02g1737 Cpe08g00584 . Bhi01g00459 Tan10g0137 Cmetu06g1405 . Hepe05g2012 . Lcy11g2038 Cla05g00106 Cam05g0115 Cec05g0112 Cco05g0119 Clacu05g0107 Cmu05g0106 Cre05g0170 Cone14ag0407 Cone15ag0446 . Cone18ag1022 Lsi05g02110 . . Cme06g00109 Blo02g00331 Blo16g00462 . . Bpe13g00979 Bpe04g00939 Bma02g01093 . . Cmo06g01049 . Cma08g00118 . . . Cpe17g01022 . . . . . . . . . . . . . . . . Csa03g00817 Chy06g00109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003686 3 1 4 3 4 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 0 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9996 PF03106 WRKY 1.40E-26 CL0274 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01049 Cmo_Chr06 FPKM 1.923851 2.260667 7.523424 7.93707 10.192284 8.586825 10.906256 52.468037 55.001434 57.146549
Cmo06g01049 Cmo_Chr00 FPKM 2.43407 1.78289 3.57617 4.345146 6.367804 4.715505 6.883832 31.470304 32.288197 32.446297