Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01054 ATGTCGGGTTCCTCCAAATTGCGACTGGTTCGATGCCCCAAGTGTGAGAATCTTCTCCCGGAGCTCGCTGATTATTCTGTTTATCAGTGCGGTGGATGTGGTACCATTCTACGAGCGAAAATTAGAAATCAGGAAGAAGACTCTGTGTCTGATAAGTCGGATGAAGACGGGGTTGGTGGGTTGTCTACTAAATCCACTACTTCTCCTGAAAAAGGGACGGTTGATCTTAGTGATGATGCCTCTGATGTGGATTTAAAGGCGAGTCCTGATTCTTTGCCTTGTGATCTTAAGGGCTCAGAGATGGATAAAGTGGAAGGTGCTGAGAAGGATGTTAACTTGAATATGGATAAAAATGGCTTGAGTGATTTGATGGGAACGGAACAAGTGGATTTGAATGTTCAGATGAACATGATGAAGCTTGGATCAGGAAGAGAATTGGATTGGAAAAGGGGAGAGACAGGTGAGATGGGAGATGGGGTTGAGAAGAATTCAAGGGGTAATGTGAAAAGTGTGAGGTTCTCAACTCCGAACCACGAAGACGATCAAACGAATCGTCAATTGGAGTTCATGTCTGGTGTGCAGGAGCTTTTAACGGGTCGTGGCAATGCCAATGGAGCTGATAAAGTTAAGCACCTCGAACAGGACCGACTCGAGCTTCTGAGGAAGCTGGACGAGTTGAAGGAACAACTTGGTCAGTCTTGGCCAGTCCCTGCCGATGGTGGAATGAGACCTCCTAAACCTTTGAATCACTCTGGTGCTTGGCCTATGGATGGTTCTTCAGGATCAAAGTATGTTGCAGGCTCTTCATTTTCCAACCATTGTTCAGAACCATTTCCTGTTGCCAATGGAATTGAGATGCCTGTCCAAAGCTATTATCCGAACAATACATCTCATTTTGGTGACCCTTTTGGATCGCAAATGCTTAGACGAAACTCCTGCCAGTTTTCGTGTGCGCATCAACAGCACCCTCACCAATATCATTCTGGCCATTATGTCGATACCAGTTTGGATTCGTTCAATCACTACCCTCCAAATCCTCCCTTTCATCAGCCTTCTTGCTCTTGTTTCCAGTGCCAAAATAGATACTCACAGGTTCCATCCTCACTACCTGGTAGCGCTTACTTCAATAGAAGGTTTCCTGATGTTCCCAACAATCCCTCACTATATTCTCATGAGAACACGGCTGCTTATGGGGCATGTGTTAATAATATTAGAACCACTAATCCTCCCGTAAATCTTCGTGATCGACAAGCACAATCACGATGGCCAACTGACTTCAATTCTGAGATTGGTGGCGTCCTTGGCAATCGTCCTCGGAGGACAGTCTTAGTGAGTGGTGGCCGTAATTGCCATCCAATTGCTGGTGGTGCTCCATTTCTAACATGTAACAATTGCTTTGAAATGCTACAACTTCCTAAGAAGCTTATGATGGTTAAGAATCAGCAAAGTGTTCGTTGTGGAGCTTGTTCTACGTTGATCAATTTTACGGTTATCGACAAGAGACTTGTTTTCTCCAATCATTCACGGGGAGGTCGATTTCCCTCAGAGGTTGATGATAGTGATGAACTGGCTGTCAGAGATTATAATTCAAATTTTGGTCACTTGAACCGTACTAATTTCTCTTCTGATGATTATGATAACAACACTCTTTACGATTTCGAGTCACTAGATAGAGAGCCTGTGCTACAGCCCATCGGTACTGGTTTAAGCTCAAATAAGCAACAAGAGATGCCAAGTTTTCATCCTACATCTTCAAGCACCTCAGAGGATGAGGACAGTCCAGATCTTTCAACTGCTCCAAGGGAGGCTACAAACAATTTACACAATTTAATCAAGACGACACGCTCTCCTCCCCTTCCTGGCTCACCGCTTCAGTCATACTTCGATTACTCATCTAATAACCAGACTGCAAACAGGTTTACCAAGGGAAATCGAAGTAGCCGTTCAGATCAGGAGAATGTGAAACCAAATAAGGTTAACTCGCGACAAAACTCTTTGAAAGAAGCATCACTGGCAACCGAGATGGATGTGTCGATGAACGACTACTCTGATACCATGGCGTTTCCTGAGACAAAGGATGCAAGTAAAGAAGATAACCAGCCAAGAGCTAGTAAAGGAGGGGAGTCTTTTTTTGCAAACATTATCAAGAAGAGTTTTAGATCTAATCAAGTCGACGATCGGAGCAGAAGTAATGTTTCAGTTAATGGACAGTTTATATCGTATCGTATGGTTAAGAAAGCTGAAAAGCGTGCTGGACCGATCCATCCCGGAAAATACTGGTACGATTCCCGGGCTGGATTCTGGGGCGTCATGGGCGGACCTTGTCTTGGCATAATCCCCCCTTACATCGAGGAATTTGACTACCCCATGCCAGAGAATTGTGCAGGAGGAAATACTGGTGTTTTTGTGAATGGCAGAGAGCTTCACCTAAAGGATTTGGATTTGCTTGCTGGTAGAGGGCTGCCCACTTCAAGGGACAGATCTTACATTATCGAGATCTCTGGCCGAGTTCTCGACGAGGACACCGGTGAAGAGCTCGAAGGCCTCGGAAAACTTGCTCCAACAGTTGAGAAGGTAAAGCATGGATTTGGCATGAAAGTTCCAAGAACAGCTTCTTAA 2619 44.83 MSGSSKLRLVRCPKCENLLPELADYSVYQCGGCGTILRAKIRNQEEDSVSDKSDEDGVGGLSTKSTTSPEKGTVDLSDDASDVDLKASPDSLPCDLKGSEMDKVEGAEKDVNLNMDKNGLSDLMGTEQVDLNVQMNMMKLGSGRELDWKRGETGEMGDGVEKNSRGNVKSVRFSTPNHEDDQTNRQLEFMSGVQELLTGRGNANGADKVKHLEQDRLELLRKLDELKEQLGQSWPVPADGGMRPPKPLNHSGAWPMDGSSGSKYVAGSSFSNHCSEPFPVANGIEMPVQSYYPNNTSHFGDPFGSQMLRRNSCQFSCAHQQHPHQYHSGHYVDTSLDSFNHYPPNPPFHQPSCSCFQCQNRYSQVPSSLPGSAYFNRRFPDVPNNPSLYSHENTAAYGACVNNIRTTNPPVNLRDRQAQSRWPTDFNSEIGGVLGNRPRRTVLVSGGRNCHPIAGGAPFLTCNNCFEMLQLPKKLMMVKNQQSVRCGACSTLINFTVIDKRLVFSNHSRGGRFPSEVDDSDELAVRDYNSNFGHLNRTNFSSDDYDNNTLYDFESLDREPVLQPIGTGLSSNKQQEMPSFHPTSSSTSEDEDSPDLSTAPREATNNLHNLIKTTRSPPLPGSPLQSYFDYSSNNQTANRFTKGNRSSRSDQENVKPNKVNSRQNSLKEASLATEMDVSMNDYSDTMAFPETKDASKEDNQPRASKGGESFFANIIKKSFRSNQVDDRSRSNVSVNGQFISYRMVKKAEKRAGPIHPGKYWYDSRAGFWGVMGGPCLGIIPPYIEEFDYPMPENCAGGNTGVFVNGRELHLKDLDLLAGRGLPTSRDRSYIIEISGRVLDEDTGEELEGLGKLAPTVEKVKHGFGMKVPRTAS 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8195768 8200457 - CmoCh06G010540.1 Cmo06g01054 384616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01054 872 MobiDBLite consensus disorder prediction 565 644 - -
Cmo06g01054 872 MobiDBLite consensus disorder prediction 562 671 - -
Cmo06g01054 872 MobiDBLite consensus disorder prediction 232 255 - -
Cmo06g01054 872 PANTHER G-LIKE PROTEIN, PUTATIVE (DUF3133)-RELATED 1 869 - -
Cmo06g01054 872 MobiDBLite consensus disorder prediction 44 98 - -
Cmo06g01054 872 Coils Coil 209 229 - -
Cmo06g01054 872 MobiDBLite consensus disorder prediction 59 74 - -
Cmo06g01054 872 PANTHER EXTRA-LARGE G-PROTEIN-LIKE 1 869 IPR040244 GO:1900150
Cmo06g01054 872 MobiDBLite consensus disorder prediction 653 671 - -
Cmo06g01054 872 Pfam Probable zinc-ribbon domain 454 497 IPR021480 -
Cmo06g01054 872 MobiDBLite consensus disorder prediction 44 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01054 - - - bhj:120083633 1411.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01054 Cmo14g02159 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00746 Cmo-Chr4:3715111 Cmo06g01054 Cmo-Chr6:8195768 2.64E-12 dispersed
Cmo06g01054 Cmo-Chr6:8195768 Cmo16g00607 Cmo-Chr16:2949630 4.03E-77 dispersed
Cmo14g02159 Cmo-Chr14:15520229 Cmo06g01054 Cmo-Chr6:8195768 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g110 Blo02g01141 . . . Bpe05g00682 . . . Cmo06g01054 . . . . . . Cpe14g00471 . . . . . . . . Cla07g01414 Cam07g1515 Cec07g1611 Cco07g1571 Clacu07g1503 Cmu07g1473 Cre07g1850 . . Cone6ag0840 Cone9ag0837 . . . Cme07g01579 . . . . . . Bma05g00858 . . . . . Cma16g00555 Car06g00867 . . . . . . . . . . . . . . . . . . Csa04g00643 Chy07g01167 .
Vvi15g757 . . . . Bpe14g00955 . . . . . Cma06g01045 Cma14g02095 Car06g00867 Car14g01899 Sed02g1733 Cpe08g00581 Cpe03g01780 Bhi01g00453 Tan10g0143 Cmetu03g2166 . Hepe05g2006 . Lcy11g2035 Cla05g00109 Cam05g0119 Cec05g0116 Cco05g0123 Clacu05g0111 Cmu05g0110 Cre05g0174 . . Cone11ag0480 Cone18ag1029 Lsi05g02104 . . Cme06g00114 . Blo16g00460 Bda11g00220 Bda13g00372 Bpe13g00977 . Bma02g01082 Bma06g01165 . Cmo06g01054 Cmo14g02159 . . . . . . . . . . . . . . . . . . . . . Csa03g00824 Chy06g00115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005300 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01054 Cmo_Chr06 FPKM 5.270492 4.937869 11.818056 15.054212 8.517263 5.380319 8.44042 23.731619 21.516071 19.470396