Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01064 ATGGGCACTAGTGAAGAGGCCAAGGCTGTGAAGTCTGAAAAACCATCTTCACCAACGCAGGATCAGAACAATGGGTCAAATTCGGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTGGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGGCCCACCACAGATGATTCCTCCATATGGCACTCCCTATGCAGCAATCTATTCTCATGGAGGTGTTTATGCACATCCTGCAGTTTCTATGGGACCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGCTCCTGCTGTAACTCCTTTGAGCATTGAAACACCTTCAAAGGTGTCTGGAAACAGTAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGACGGCCTGGCAATGTCTATCGGCAATGTTAATACTGAGAGTGCTGATGGGCCCAGTGAGCACGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAAAGAAGCCGTGAGGGCACACCTACCACTGCCTCTCATATCGCAGGGAAAGATGCAAAAATTGAGACACAAGGAAGTCCAGTTACTCCTGCTGAAATGAACGAAAGCTCTAGCAAGTTATTGGGTATAACCAAAGCAGCTGATGCAACTGGAAAGCTTGGATCTGTGATTTCTCCTGGAATGTCTACAGCTTTGGAACTTAGGAATCCTTCTAGTATGAACACCATTTCAGGTCCAACGAGCGTCCCACCTTGTTCGGTATTGCCTTCTGAAGTCTGGCTACAGAATGAAAAAGAACTAAAACGGGAAAGGAGAAAACAGTCAAATAGAGAATCCGCTAGGAGGTCGAGGTTAAGGAAGCAGGCTGAGACTGAAGAACTAGCTCATAAAGTCGATTCACTGACTGCGGAGAACGTCGCTATTAGATCTGAAATAAGTAGATTGTCGGAGAATTCCGAGAAACTTAAGCAAGAAAACGCTACATTAATGGTGCGCTGCTGCCCTCTTCGATGTACTCTTTTAGAGAAGCTTAAAAGCGCTCAATCAGGTCGAACAGAAGCCTTAGACATGAACGAAAAAAGGACGCAACGCCTTGTAAGCACAGACATCAAAGGACCTGTGAACAAAAGCATTAACGAAGAGAGTAACATCTGCAAGAAGAAATCGAGTTCGGGAGCAAAGTTGCGTCAACTCTTGGACACGAATCCAAGGGCTGACTGCGTCGCCGCTAGCTAA 1305 46.21 MGTSEEAKAVKSEKPSSPTQDQNNGSNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWGPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPAPAVTPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVNTESADGPSEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTTASHIAGKDAKIETQGSPVTPAEMNESSSKLLGITKAADATGKLGSVISPGMSTALELRNPSSMNTISGPTSVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELAHKVDSLTAENVAIRSEISRLSENSEKLKQENATLMVRCCPLRCTLLEKLKSAQSGRTEALDMNEKRTQRLVSTDIKGPVNKSINEESNICKKKSSSGAKLRQLLDTNPRADCVAAS 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8264306 8268973 + CmoCh06G010640.1 Cmo06g01064 384626

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01064 434 Coils Coil 321 355 - -
Cmo06g01064 434 Pfam Disordered region downstream of MFMR 133 266 - -
Cmo06g01064 434 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 434 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cmo06g01064 434 MobiDBLite consensus disorder prediction 1 30 - -
Cmo06g01064 434 MobiDBLite consensus disorder prediction 150 187 - -
Cmo06g01064 434 Gene3D - 290 358 - -
Cmo06g01064 434 MobiDBLite consensus disorder prediction 289 314 - -
Cmo06g01064 434 PANTHER G-BOX-BINDING FACTOR 3 1 434 - -
Cmo06g01064 434 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Cmo06g01064 434 MobiDBLite consensus disorder prediction 13 30 - -
Cmo06g01064 434 CDD bZIP_plant_GBF1 292 340 IPR045314 GO:0003700|GO:0006355
Cmo06g01064 434 MobiDBLite consensus disorder prediction 150 225 - -
Cmo06g01064 434 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 289 352 IPR004827 GO:0003700|GO:0006355
Cmo06g01064 434 SUPERFAMILY Leucine zipper domain 290 347 IPR046347 GO:0003700|GO:0006355
Cmo06g01064 434 SMART brlzneu 287 351 IPR004827 GO:0003700|GO:0006355
Cmo06g01064 434 MobiDBLite consensus disorder prediction 101 134 - -
Cmo06g01064 434 MobiDBLite consensus disorder prediction 116 134 - -
Cmo06g01064 434 Pfam bZIP transcription factor 287 349 IPR004827 GO:0003700|GO:0006355
Cmo06g01064 434 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 294 309 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01064 K09060 GBF; plant G-box-binding factor - csv:101213720 671.003
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01064 Cmo-Chr6:8264306 Cmo07g00502 Cmo-Chr7:2267677 3.37E-42 dispersed
Cmo14g02149 Cmo-Chr14:15463162 Cmo06g01064 Cmo-Chr6:8264306 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g96 . . . . . . . . Cmo06g01064 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0830 . . . . . . . . . . . . . . . . Cma06g01037 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003687 1 2 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 4 3 1 1 1 1 1 1 1 1 5 2 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9997 PF16596 MFMR_assoc 2.00E-20 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01064 Cmo_Chr06 FPKM 8.162463 9.66495 20.011017 18.444231 12.552364 15.093872 14.689067 19.311918 18.146624 17.180958
Cmo06g01064 Cmo_Chr00 FPKM 6.420053 7.035569 19.845921 17.907013 12.562153 11.627834 13.77878 15.601583 14.516219 16.959873