Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01077 ATGGCGGACCACTCTGACAACGTGGAGTCGAAATCGGAGTCATTGATCGACAAGATAGTCGAGAAGATTCATGATCATGATTCTTCTTCGTCCGGATCAGACTCTGAAACCGAGGGATCCTTGAAGGAGAAGGTCTTCCGCCTTTTTGGAAGGGAGAGGCCAGTTCATCATGTCTTCGGCGGTGGAAAACCTGCTGATTTATTCTTGTGGAGGAATAAGAAGATCTCAGCTGGTGTCCTTACTGGAGCCACTGTTATCTGGGTTTTCTTTGAACTGCTCGAGTGCCATCTGCTTACGTTTGTTTCTCGTTCTCTGATCCTCTCTCTTGGGCTCTTGTTTCTTTGGTCCAATGCCCACACATTTATCTACAAGAGTCCACCCCGAATCCCAGAAGTTCAACTTCCTGCGGACCCCTTCCTGGAGTTTGCTTCAACTTTGAGGGCGGAAATTAATTGTGGTTTTGCATTATTGCGGGACATTGCTACCGGAAGAGATTTGAAGAAATTCATCACTGCAATTGCTGGGTTGTGGGTCCTGTCGATCGTGGGAAGCTGGTGCAATTTCTTGACGTTGTTCTACATAAACTTTGTTTTGTTGCACACTGTTCCTGTTCTGTATGAGAAGTATGAAGATAAGATCGACCCATTAGCGGAAAAAGCATTAATTGAGTTCAAAAAGCACTACGCCGTGTTTGAAGAAAAGGTTTTGAGCAAGATCCCAAAAGGGCCATTGAAAGGCTACATTTTTCTTGCCTAA 756 45.11 MADHSDNVESKSESLIDKIVEKIHDHDSSSSGSDSETEGSLKEKVFRLFGRERPVHHVFGGGKPADLFLWRNKKISAGVLTGATVIWVFFELLECHLLTFVSRSLILSLGLLFLWSNAHTFIYKSPPRIPEVQLPADPFLEFASTLRAEINCGFALLRDIATGRDLKKFITAIAGLWVLSIVGSWCNFLTLFYINFVLLHTVPVLYEKYEDKIDPLAEKALIEFKKHYAVFEEKVLSKIPKGPLKGYIFLA 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8334492 8336948 - CmoCh06G010770.1 Cmo06g01077 384639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01077 251 PANTHER RETICULON 1 246 IPR045064 GO:0009617
Cmo06g01077 251 ProSiteProfiles Reticulon domain profile. 64 251 IPR003388 -
Cmo06g01077 251 PANTHER RETICULON-LIKE PROTEIN 1 246 - -
Cmo06g01077 251 Pfam Reticulon 65 220 IPR003388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01077 - - - csv:101216370 428.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01077 Cmo08g00858 CCT
Cmo06g01077 Cmo15g01325 CCT
Cmo02g01447 Cmo06g01077 CCT
Cmo06g01077 Cmo15g01325 ECH
Cmo02g01447 Cmo06g01077 ECH
Cmo06g01077 Cmo08g00858 ECH
Cmo06g01077 Cmo14g02130 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01077 Cmo-Chr6:8334492 Cmo15g01325 Cmo-Chr15:9091970 8.57E-110 dispersed
Cmo14g02130 Cmo-Chr14:15392761 Cmo06g01077 Cmo-Chr6:8334492 1.40E-141 wgd
Cmo16g00092 Cmo-Chr16:430265 Cmo06g01077 Cmo-Chr6:8334492 1.70E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g61 Blo02g01126 . Bda06g00125 Bda08g00499 Bpe05g00665 Bpe07g00090 . . Cmo06g01077 . Cma02g01416 Cma15g01257 Car02g01186 Car15g01134 . . Cpe05g00366 . . . . . . . . . . . . . . Cone8ag0269 Cone12ag0275 Cone6ag0819 Cone9ag0818 . Csa05g00229 Chy09g01271 . . . . . . . . Bma12g00060 . Cmo02g01447 Cmo15g01325 . . Car06g00886 . . Cpe13g00128 Bhi12g00174 . . Lac11g2034 Hepe06g1503 . Lcy12g1596 Cla01g00212 Cam01g0217 Cec01g0211 Cco01g0215 Clacu01g0212 Cmu01g0206 Cre09g2301 Lsi09g00200 . . Cme09g01814
Vvi15g796 . . . Bda08g00499 Bpe14g00966 . . . Cmo08g00858 . Cma06g01024 Cma14g02072 Car06g00886 Car14g01872 . Cpe08g00561 Cpe03g01756 . . . . . . . Cla05g00134 Cam05g0148 Cec05g0146 Cco05g0156 Clacu05g0143 Cmu05g0137 Cre05g0200 Cone14ag0391 Cone15ag0431 Cone11ag0452 Cone18ag1054 Lsi05g02077 Csa06g00091 Chy11g01670 Cme06g00145 Blo02g00344 Blo16g00447 Bda11g00232 Bda13g00362 Bpe13g00963 . Bma02g01069 Bma06g01179 Sed09g0022 Cmo06g01077 Cmo14g02130 Cma08g00885 . Car08g00768 . Cpe17g00375 . Bhi12g02096 Tan06g1969 Cmetu11g2302 . . . Lcy13g0780 Cla06g00314 Cam06g0342 Cec06g0346 Cco06g0342 Clacu06g0333 Cmu06g0330 Cre06g1101 Lsi09g01599 Csa03g00854 Chy06g00140 Cme11g02193
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000326 4 3 4 3 4 4 7 4 4 5 4 4 7 3 4 7 4 9 7 4 4 4 4 4 4 4 4 6 4 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01077 Cmo_Chr06 FPKM 38.794903 37.212227 2.052954 1.957732 35.670006 42.233192 36.612076 2.781189 2.716051 3.370284
Cmo06g01077 Cmo_Chr00 FPKM 10.71599 12.514987 0.0 0.0 6.928707 4.624406 4.959316 0.0 0.0 0.0
Cmo06g01077 Cmo_Chr00 FPKM 9.235952 9.190851 0.0 0.0 0.0 2.114716 0.0 0.0 0.0 0.0