Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01094 | ATGCGAGAGCACCATTCTCTTTGTTTTTATCGCGGATTCATTGGCGCCAAAGACAAACGAGCTATTAGGATAGATCACAATTGTCAGCACATGTCTGAAAGGGATGAACCGGCAGTCTTAAGAGAGGCAAAACGTTGGAGGAATATTCTTGGGATTAGTTCGTATGGAGTTTTGAAGATTCAGTTTCCTAGAGTTTCTTGTCATGGCGGTTGTCGAGCTGGTCCAACTAATTATGCAGAAGCTTCACCAATTATGATCAGCTCACGCAGAGAGATTGTAGAAGAGCCAGTAAGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGGTATGCACTAAAATCTTCACATGGGAAGAAGATTTGCCTCCTCCATGTTCATGTCCCTGCACAGATGATTCCATTAATGGGAACCAAATTTCCAGCGAACTCATTGCAGAAAGAGGAAGTGAGAGCATATCATGAGTTCGAGAAGCAAAATTTGCGGAGGATCATGAATGAGTATATTCTGTACTGTCTTCAAGAAGGGGTTCAAGCTGAGAGATTATGTGCTGAAGCTGAGAGTATCGAAAAGGGAATAGTTGATATGATTTCCCTGCACGGTATTAAAATGCTTGTTATGGGAGCAGCTGTAGACAAGTGCTATTCGAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCTTTTATGTGCGCTCACAGGCACTTGCTTCTTGTCACATTGAGTTTATCTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCGGATGGAGCTCAAGTAGAAGCTGCAGTTACATCGCCACAAACAAATCCGGACGCTGAGGCCCCGGAAATTTCCCAATGCAGATCTCAGTCACTTCCATTGGAGCAGGTTAACAGCAGGGAAGTCGGGAGTCCATCTTCGGATTTACGTTTTAGAGGGAGATCATTGCTTGTTGACCATTTTAGAGAGAGCATAGTAGATCCTTCTCCTTCTCCAAATATTATGAACGGGGTTCGAACTGCAAGAAGCTTGGACGTTAATGAGACTTTTGACGAATTGAGTTTATTGGAAAGGAGAAGTCCATATGAAAGGTCAGACAATTCCTTACGCTCTCCTCGCGGTGTGATCGACATGGCTCCTTCTCCACTTTCCAGGGTCAAGTTATGTGAAAATGGGTTGGAGCAGGATGGGAAAACCAGTGATTACCTTTACAATCAATATGAACGGGTGATGATGGAGGCTACAAACGCAAGGCGCGACGCATTTTTAGAGGCAATTGCACGTAGAAAATATGAGAAAGAGGCCGTTAATGCTCTATGCAAGGTTAAAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAACTAGCAAGGGAAAAGGCTAAACTTGAAAGCATAAAGAAGCAACTAAATGAAGGGATGGAAGAGCTCCGGATAGCTCAAGATCAGAAGGCAAGCCTTGAGAGAGAACTTTTGGAATCTGATCTGACGGTGAAGGAGTTGGAGCAAAGGATTCTTTCTGCTGTTGAATTGTTACAAAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATTCAACGCGACAATGCTCTTACGGAAGCAGAGGAGCTTAGAAAAAATCAATCCGCTGGCACGATTCTTCCGCAGTTCTTTACGGAGTTCCCGTTTCGGGAGATCGAGGAAGCTACTAGAAACTTCGATCCTTCCCTGAAGATCGGAGAAGGCGGATATGGGAGTATATATAAAGGCTTCTTGCGCCATACCATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAACGTTTTAAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGAGCTTGTCCCGAAGCTTGGGTTCTCGTCTACGAATACCTCTGTAACGGAAGCCTCGAGGATAAGCTCAGCTGCAAGAACAATACTCCGCCTTTACCTTGGCAAACACGAATACGCATCGCTACTGAGTTATGCTCGGCCATTATGTTTCTTCATTCAAGTAAGCCCCACAGCATCATTCATGGTGATTTGAAACCTGCAAATGTATTACTTGATGCTAACTTTGTATGCAAGCTTGGTGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAACGCCGAACGACAATGAAACACTTGTTTGGAGAACTGACAATCCCAAGGGAACTTTTCCTTACATGGATCCTGATTATCTTTCGTCTGGAGAGCTAACGACGAAGTCGGATGTTTATTCGTTCGGGATTATACTGTTACGATTGTTAACTGGTAGATCTGCAATAGGGATATCAAAGGAAGTCCAATATGCAGTGGGAAATGGAAAGTTAAAATCCATTTTGGATCCTTTAGCGGGCGATTGGCCATTCGTGCAGGCTGAACAGCTCGCTCGATTGGCCTTGAGGTGTTGTGATATGAACCGAAAGAGTCGCCCCGATCTCATTACAGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCCTGTGGAGGCCTATTGTCCATCCAACTCGGTTCGTCCGAACACTTGCAACCTCCCCCTTACTTTATCTGTCCCATCTTTCAGGAAGTCATGCTGGATCCACATGTGGCTGCAGATGGTTTTACGTACGAAGCAGAGGCGGCGAGAGGATGGCTAGACAGTGGACATGATACTTCGCCAATGACGAATCTTAGGCTCGAGCACCGCAACCTCGTCCCCAACCGTGCTCTTCGTTCGGCTATACAGGAATGGCTCCAAAGGAACTGA | 2814 | 45.02 | MREHHSLCFYRGFIGAKDKRAIRIDHNCQHMSERDEPAVLREAKRWRNILGISSYGVLKIQFPRVSCHGGCRAGPTNYAEASPIMISSRREIVEEPVRAISEDVICVAVGKDVKECLSVLRYALKSSHGKKICLLHVHVPAQMIPLMGTKFPANSLQKEEVRAYHEFEKQNLRRIMNEYILYCLQEGVQAERLCAEAESIEKGIVDMISLHGIKMLVMGAAVDKCYSRRMVDLKSKKAFYVRSQALASCHIEFICKGNLICTREGRSDGAQVEAAVTSPQTNPDAEAPEISQCRSQSLPLEQVNSREVGSPSSDLRFRGRSLLVDHFRESIVDPSPSPNIMNGVRTARSLDVNETFDELSLLERRSPYERSDNSLRSPRGVIDMAPSPLSRVKLCENGLEQDGKTSDYLYNQYERVMMEATNARRDAFLEAIARRKYEKEAVNALCKVKAAEGLYAEELKQRKEVEQELAREKAKLESIKKQLNEGMEELRIAQDQKASLERELLESDLTVKELEQRILSAVELLQSYKREREELQIQRDNALTEAEELRKNQSAGTILPQFFTEFPFREIEEATRNFDPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLVYEYLCNGSLEDKLSCKNNTPPLPWQTRIRIATELCSAIMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDETPNDNETLVWRTDNPKGTFPYMDPDYLSSGELTTKSDVYSFGIILLRLLTGRSAIGISKEVQYAVGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGLLSIQLGSSEHLQPPPYFICPIFQEVMLDPHVAADGFTYEAEAARGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN | 937 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8423517 | 8429177 | + | CmoCh06G010940.1 | Cmo06g01094 | 384656 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01094 | 937 | SUPERFAMILY | RING/U-box | 861 | 937 | - | - | |
Cmo06g01094 | 937 | Pfam | Protein kinase domain | 583 | 834 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01094 | 937 | SMART | serkin_6 | 578 | 844 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01094 | 937 | SMART | Ubox_2 | 870 | 933 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo06g01094 | 937 | CDD | RING-Ubox_WDSUB1_like | 871 | 912 | - | - | |
Cmo06g01094 | 937 | ProSiteProfiles | Protein kinase domain profile. | 578 | 871 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01094 | 937 | ProSiteProfiles | U-box domain profile. | 866 | 937 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo06g01094 | 937 | PANTHER | OS02G0152300 PROTEIN | 100 | 933 | - | - | |
Cmo06g01094 | 937 | ProSitePatterns | Protein kinases ATP-binding region signature. | 584 | 605 | IPR017441 | GO:0005524 | |
Cmo06g01094 | 937 | SUPERFAMILY | Adenine nucleotide alpha hydrolases-like | 115 | 220 | - | - | |
Cmo06g01094 | 937 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 33 | 100 | 933 | - | - | |
Cmo06g01094 | 937 | SUPERFAMILY | Protein kinase-like (PK-like) | 553 | 836 | IPR011009 | - | |
Cmo06g01094 | 937 | CDD | STK_N | 104 | 257 | - | - | |
Cmo06g01094 | 937 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 866 | 937 | IPR013083 | - | |
Cmo06g01094 | 937 | Pfam | U-box domain | 868 | 937 | IPR003613 | GO:0004842|GO:0016567 | |
Cmo06g01094 | 937 | Gene3D | HUPs | 101 | 231 | IPR014729 | - | |
Cmo06g01094 | 937 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 696 | 708 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo06g01094 | 937 | Gene3D | Phosphorylase Kinase; domain 1 | 558 | 650 | - | - | |
Cmo06g01094 | 937 | Coils | Coil | 448 | 552 | - | - | |
Cmo06g01094 | 937 | Gene3D | Transferase(Phosphotransferase) domain 1 | 651 | 850 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00622 | Cmo-Chr1:3213170 | Cmo06g01094 | Cmo-Chr6:8423517 | 3.72E-21 | dispersed | |
Cmo02g00806 | Cmo-Chr2:4957060 | Cmo06g01094 | Cmo-Chr6:8423517 | 2.19E-157 | dispersed | |
Cmo06g01094 | Cmo-Chr6:8423517 | Cmo17g00412 | Cmo-Chr17:2732800 | 0 | dispersed | |
Cmo07g00583 | Cmo-Chr7:2633161 | Cmo06g01094 | Cmo-Chr6:8423517 | 1.92E-75 | transposed | |
Cmo14g02105 | Cmo-Chr14:15250662 | Cmo06g01094 | Cmo-Chr6:8423517 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74423 | PF00069 | Pkinase | 6.00E-41 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01094 | - | - | csv:101211387 | 1457.58 |