Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01094 ATGCGAGAGCACCATTCTCTTTGTTTTTATCGCGGATTCATTGGCGCCAAAGACAAACGAGCTATTAGGATAGATCACAATTGTCAGCACATGTCTGAAAGGGATGAACCGGCAGTCTTAAGAGAGGCAAAACGTTGGAGGAATATTCTTGGGATTAGTTCGTATGGAGTTTTGAAGATTCAGTTTCCTAGAGTTTCTTGTCATGGCGGTTGTCGAGCTGGTCCAACTAATTATGCAGAAGCTTCACCAATTATGATCAGCTCACGCAGAGAGATTGTAGAAGAGCCAGTAAGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGGTATGCACTAAAATCTTCACATGGGAAGAAGATTTGCCTCCTCCATGTTCATGTCCCTGCACAGATGATTCCATTAATGGGAACCAAATTTCCAGCGAACTCATTGCAGAAAGAGGAAGTGAGAGCATATCATGAGTTCGAGAAGCAAAATTTGCGGAGGATCATGAATGAGTATATTCTGTACTGTCTTCAAGAAGGGGTTCAAGCTGAGAGATTATGTGCTGAAGCTGAGAGTATCGAAAAGGGAATAGTTGATATGATTTCCCTGCACGGTATTAAAATGCTTGTTATGGGAGCAGCTGTAGACAAGTGCTATTCGAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCTTTTATGTGCGCTCACAGGCACTTGCTTCTTGTCACATTGAGTTTATCTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCGGATGGAGCTCAAGTAGAAGCTGCAGTTACATCGCCACAAACAAATCCGGACGCTGAGGCCCCGGAAATTTCCCAATGCAGATCTCAGTCACTTCCATTGGAGCAGGTTAACAGCAGGGAAGTCGGGAGTCCATCTTCGGATTTACGTTTTAGAGGGAGATCATTGCTTGTTGACCATTTTAGAGAGAGCATAGTAGATCCTTCTCCTTCTCCAAATATTATGAACGGGGTTCGAACTGCAAGAAGCTTGGACGTTAATGAGACTTTTGACGAATTGAGTTTATTGGAAAGGAGAAGTCCATATGAAAGGTCAGACAATTCCTTACGCTCTCCTCGCGGTGTGATCGACATGGCTCCTTCTCCACTTTCCAGGGTCAAGTTATGTGAAAATGGGTTGGAGCAGGATGGGAAAACCAGTGATTACCTTTACAATCAATATGAACGGGTGATGATGGAGGCTACAAACGCAAGGCGCGACGCATTTTTAGAGGCAATTGCACGTAGAAAATATGAGAAAGAGGCCGTTAATGCTCTATGCAAGGTTAAAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAACTAGCAAGGGAAAAGGCTAAACTTGAAAGCATAAAGAAGCAACTAAATGAAGGGATGGAAGAGCTCCGGATAGCTCAAGATCAGAAGGCAAGCCTTGAGAGAGAACTTTTGGAATCTGATCTGACGGTGAAGGAGTTGGAGCAAAGGATTCTTTCTGCTGTTGAATTGTTACAAAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATTCAACGCGACAATGCTCTTACGGAAGCAGAGGAGCTTAGAAAAAATCAATCCGCTGGCACGATTCTTCCGCAGTTCTTTACGGAGTTCCCGTTTCGGGAGATCGAGGAAGCTACTAGAAACTTCGATCCTTCCCTGAAGATCGGAGAAGGCGGATATGGGAGTATATATAAAGGCTTCTTGCGCCATACCATGGTGGCTATAAAAATCCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAACGTTTTAAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGAGCTTGTCCCGAAGCTTGGGTTCTCGTCTACGAATACCTCTGTAACGGAAGCCTCGAGGATAAGCTCAGCTGCAAGAACAATACTCCGCCTTTACCTTGGCAAACACGAATACGCATCGCTACTGAGTTATGCTCGGCCATTATGTTTCTTCATTCAAGTAAGCCCCACAGCATCATTCATGGTGATTTGAAACCTGCAAATGTATTACTTGATGCTAACTTTGTATGCAAGCTTGGTGACTTTGGAATTTGTCGCTTATTGTCTCGGGATGAAACGCCGAACGACAATGAAACACTTGTTTGGAGAACTGACAATCCCAAGGGAACTTTTCCTTACATGGATCCTGATTATCTTTCGTCTGGAGAGCTAACGACGAAGTCGGATGTTTATTCGTTCGGGATTATACTGTTACGATTGTTAACTGGTAGATCTGCAATAGGGATATCAAAGGAAGTCCAATATGCAGTGGGAAATGGAAAGTTAAAATCCATTTTGGATCCTTTAGCGGGCGATTGGCCATTCGTGCAGGCTGAACAGCTCGCTCGATTGGCCTTGAGGTGTTGTGATATGAACCGAAAGAGTCGCCCCGATCTCATTACAGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCCTGTGGAGGCCTATTGTCCATCCAACTCGGTTCGTCCGAACACTTGCAACCTCCCCCTTACTTTATCTGTCCCATCTTTCAGGAAGTCATGCTGGATCCACATGTGGCTGCAGATGGTTTTACGTACGAAGCAGAGGCGGCGAGAGGATGGCTAGACAGTGGACATGATACTTCGCCAATGACGAATCTTAGGCTCGAGCACCGCAACCTCGTCCCCAACCGTGCTCTTCGTTCGGCTATACAGGAATGGCTCCAAAGGAACTGA 2814 45.02 MREHHSLCFYRGFIGAKDKRAIRIDHNCQHMSERDEPAVLREAKRWRNILGISSYGVLKIQFPRVSCHGGCRAGPTNYAEASPIMISSRREIVEEPVRAISEDVICVAVGKDVKECLSVLRYALKSSHGKKICLLHVHVPAQMIPLMGTKFPANSLQKEEVRAYHEFEKQNLRRIMNEYILYCLQEGVQAERLCAEAESIEKGIVDMISLHGIKMLVMGAAVDKCYSRRMVDLKSKKAFYVRSQALASCHIEFICKGNLICTREGRSDGAQVEAAVTSPQTNPDAEAPEISQCRSQSLPLEQVNSREVGSPSSDLRFRGRSLLVDHFRESIVDPSPSPNIMNGVRTARSLDVNETFDELSLLERRSPYERSDNSLRSPRGVIDMAPSPLSRVKLCENGLEQDGKTSDYLYNQYERVMMEATNARRDAFLEAIARRKYEKEAVNALCKVKAAEGLYAEELKQRKEVEQELAREKAKLESIKKQLNEGMEELRIAQDQKASLERELLESDLTVKELEQRILSAVELLQSYKREREELQIQRDNALTEAEELRKNQSAGTILPQFFTEFPFREIEEATRNFDPSLKIGEGGYGSIYKGFLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLVYEYLCNGSLEDKLSCKNNTPPLPWQTRIRIATELCSAIMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRDETPNDNETLVWRTDNPKGTFPYMDPDYLSSGELTTKSDVYSFGIILLRLLTGRSAIGISKEVQYAVGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDVWRVLGPMRASCGGLLSIQLGSSEHLQPPPYFICPIFQEVMLDPHVAADGFTYEAEAARGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8423517 8429177 + CmoCh06G010940.1 Cmo06g01094 384656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01094 937 SUPERFAMILY RING/U-box 861 937 - -
Cmo06g01094 937 Pfam Protein kinase domain 583 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01094 937 SMART serkin_6 578 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01094 937 SMART Ubox_2 870 933 IPR003613 GO:0004842|GO:0016567
Cmo06g01094 937 CDD RING-Ubox_WDSUB1_like 871 912 - -
Cmo06g01094 937 ProSiteProfiles Protein kinase domain profile. 578 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01094 937 ProSiteProfiles U-box domain profile. 866 937 IPR003613 GO:0004842|GO:0016567
Cmo06g01094 937 PANTHER OS02G0152300 PROTEIN 100 933 - -
Cmo06g01094 937 ProSitePatterns Protein kinases ATP-binding region signature. 584 605 IPR017441 GO:0005524
Cmo06g01094 937 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 115 220 - -
Cmo06g01094 937 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 100 933 - -
Cmo06g01094 937 SUPERFAMILY Protein kinase-like (PK-like) 553 836 IPR011009 -
Cmo06g01094 937 CDD STK_N 104 257 - -
Cmo06g01094 937 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 866 937 IPR013083 -
Cmo06g01094 937 Pfam U-box domain 868 937 IPR003613 GO:0004842|GO:0016567
Cmo06g01094 937 Gene3D HUPs 101 231 IPR014729 -
Cmo06g01094 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Cmo06g01094 937 Gene3D Phosphorylase Kinase; domain 1 558 650 - -
Cmo06g01094 937 Coils Coil 448 552 - -
Cmo06g01094 937 Gene3D Transferase(Phosphotransferase) domain 1 651 850 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00622 Cmo-Chr1:3213170 Cmo06g01094 Cmo-Chr6:8423517 3.72E-21 dispersed
Cmo02g00806 Cmo-Chr2:4957060 Cmo06g01094 Cmo-Chr6:8423517 2.19E-157 dispersed
Cmo06g01094 Cmo-Chr6:8423517 Cmo17g00412 Cmo-Chr17:2732800 0 dispersed
Cmo07g00583 Cmo-Chr7:2633161 Cmo06g01094 Cmo-Chr6:8423517 1.92E-75 transposed
Cmo14g02105 Cmo-Chr14:15250662 Cmo06g01094 Cmo-Chr6:8423517 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74423 PF00069 Pkinase 6.00E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01094 - - csv:101211387 1457.58