Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01099 ATGTCTTCTCCAAGCAAACGCCGAGAGATGGACTTGATGAAACTGATGATGAGCGATTACAAAGTGGAGATGATTAATGATGGGATGCAAGAGTTTTATGTAGAGTTTCATGGACCCAGTGAGAGTCCTTATCATGGAGGTGTATGGAGGATACGAGTCGAACTCCCGGACGCTTACCCGTATAAATCGCCTTCGATAGGATTCGTTAACAAAATTTACCACCCCAATGTTGATGAGATGTCGGGTTCGGTTTGTTTGGACGTTATCAATCAAACTTGGAGTCCCATGTTCGATCTTGTAAATGTTTTTGAAGTGTTCCTACCACAACTTCTTTTGTATCCCAATCCATCAGATCCTTTGAATGGAGAGGCTGCAGCCTTGATGATGCGTGACCGTGTTGCTTATGATCAAAGAGTAAAAGAAGACATAGTAGCTGCACCCGACCAATCAAGCGACGAGGAACTAAGTGAAAATGAATCCGAGTCGAGCGAGGAGGAAGTTGCAGGGAAAGCGGACCTCTAA 522 44.44 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVEFHGPSESPYHGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEDIVAAPDQSSDEELSENESESSEEEVAGKADL 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8461578 8466736 - CmoCh06G010990.1 Cmo06g01099 384661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01099 173 Pfam Ubiquitin-conjugating enzyme 10 141 IPR000608 -
Cmo06g01099 173 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Cmo06g01099 173 CDD UBCc 7 141 IPR000608 -
Cmo06g01099 173 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 172 - -
Cmo06g01099 173 SUPERFAMILY UBC-like 4 142 IPR016135 -
Cmo06g01099 173 SMART ubc_7 4 148 - -
Cmo06g01099 173 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-21 KDA 1 3 172 - -
Cmo06g01099 173 MobiDBLite consensus disorder prediction 141 173 - -
Cmo06g01099 173 Gene3D Ubiquitin Conjugating Enzyme 1 160 IPR016135 -
Cmo06g01099 173 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01099 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - csv:101221190 303.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01099 Cmo-Chr6:8461578 Cmo11g00108 Cmo-Chr11:564373 4.95E-90 dispersed
Cmo06g01099 Cmo-Chr6:8461578 Cmo15g01302 Cmo-Chr15:8938599 3.13E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g14 Blo02g01112 . Bda06g00114 Bda08g00514 Bpe05g00648 . Bma07g01664 . Cmo06g01099 . . . Car02g01207 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00821 Bma12g00072 . . . . . Car06g00910 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01099 Cmo_Chr06 FPKM 3.736038 4.785094 8.467036 8.12555 32.073746 28.85076 32.808887 21.613527 21.67285 23.680273