Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01104 ATGTCAATATATGATTCCTCATTCTTTAACACGGCGCTCTCTAAACGGACCTCCATTTTCGGCCTTCATCTCTGGGTTGTAATCGGAATCGTAGTCGGAGCCTTAATAGTTCTCGCACTGTTTCTTCTTTCACTTTGCCTCACTTCTCGCAAGCGGAATCGCCATAAGAACAAAATCCGTTTCCCTAAGTCCACAGCCGACCATTCTCCTCCCATTTCGAAAGAAATCCAGGAAATCGTCCATAACGCGGTACCGGATCATCACCACCATGTGCAGCCGGAGATTCATGTCGAGATCGGAAAATTAGAGCATCGAGTTGTTTTCTCTGATAGGCCGTCTAGTGGGGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCGCTTGGATCTGGTACTGTTGGGCCTGAAGTTTCGCATCTTGGTTGGGGCAGATGGTATACTCTTAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAACGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTAGGTACTTTGGGAGATGGTACAAGAATTGCTATCAAGAATCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTTAAAGTGGAAGTTGAAGCAATTGGAAGAGTAAGACACAAGAATCTTGTCAGGCTGCTAGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTACGAGTACGTTAACAATGGCAATCTAGATCAGTGGCTTCATGGCGACGTCGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACGGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATATTGCTTGACCGTCAGTGGAATGCTAAAGTATCTGATTTCGGGCTAGCCAAGCTTCTTTGTTCCGAAAGGAGCTATGTGACGACCCGTGTAATGGGTACATTTGGCTATGTTGCGCCTGAGTACGCTTGCACGGGAATGTTGAATGAGAAGAGTGATGTTTATAGCTTTGGAATTCTAATTATGGAGATAATTTCTGGGCGGAGCCCTGTCGATTATAGTAGACCTCAAGGAGAGGTCAATTTGGTGGATTGGTTGAAAGCAATGGTTGGAGATAGAAGATCCGAGGAAGTGGTTGACCTCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTAAAACGTGTTCTGCTGGTCGCTCTTCGGTGTGTCGATCCTGATGCTTCGAAGAGGCCGAAAATGGGACATGTCATCCACATGCTTGAGGCAGATAATTTGCTGTCTAATGATGAATACCGGGTCGGTAAGGATGCTTCTCATTCAACTCAAGGTAATCAACACGGTCTGAGACGAGTTAACCATCAGAAAGACGAAGGAACATGTTCTAATATAAGTGAAGGTGACAGTGATGGAAACATTCAACATCCAAGTAGGTGGAGATAA 1464 46.04 MSIYDSSFFNTALSKRTSIFGLHLWVVIGIVVGALIVLALFLLSLCLTSRKRNRHKNKIRFPKSTADHSPPISKEIQEIVHNAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASLGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGTLGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRRSEEVVDLKLPEKPPSKALKRVLLVALRCVDPDASKRPKMGHVIHMLEADNLLSNDEYRVGKDASHSTQGNQHGLRRVNHQKDEGTCSNISEGDSDGNIQHPSRWR 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8497268 8500552 - CmoCh06G011040.1 Cmo06g01104 384666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01104 487 PANTHER OS01G0323000 PROTEIN 2 446 - -
Cmo06g01104 487 ProSiteProfiles Protein kinase domain profile. 157 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01104 487 CDD STKc_IRAK 163 429 - -
Cmo06g01104 487 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 2 446 - -
Cmo06g01104 487 MobiDBLite consensus disorder prediction 443 487 - -
Cmo06g01104 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Cmo06g01104 487 SUPERFAMILY Protein kinase-like (PK-like) 136 429 IPR011009 -
Cmo06g01104 487 Gene3D Transferase(Phosphotransferase) domain 1 233 444 - -
Cmo06g01104 487 ProSitePatterns Protein kinases ATP-binding region signature. 163 185 IPR017441 GO:0005524
Cmo06g01104 487 SMART serkin_6 157 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01104 487 Gene3D Phosphorylase Kinase; domain 1 132 232 - -
Cmo06g01104 487 Pfam Protein tyrosine and serine/threonine kinase 160 428 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01104 Cmo-Chr6:8497268 Cmo07g00711 Cmo-Chr7:3210008 0 dispersed
Cmo16g00107 Cmo-Chr16:490741 Cmo06g01104 Cmo-Chr6:8497268 1.26E-87 dispersed
Cmo06g01104 Cmo-Chr6:8497268 Cmo14g02120 Cmo-Chr14:15315376 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74425 PF07714 PK_Tyr_Ser-Thr 9.00E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01104 - - cmos:111449863 944.495