Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01104 | ATGTCAATATATGATTCCTCATTCTTTAACACGGCGCTCTCTAAACGGACCTCCATTTTCGGCCTTCATCTCTGGGTTGTAATCGGAATCGTAGTCGGAGCCTTAATAGTTCTCGCACTGTTTCTTCTTTCACTTTGCCTCACTTCTCGCAAGCGGAATCGCCATAAGAACAAAATCCGTTTCCCTAAGTCCACAGCCGACCATTCTCCTCCCATTTCGAAAGAAATCCAGGAAATCGTCCATAACGCGGTACCGGATCATCACCACCATGTGCAGCCGGAGATTCATGTCGAGATCGGAAAATTAGAGCATCGAGTTGTTTTCTCTGATAGGCCGTCTAGTGGGGAGAGCAGAGGCGCTGTGAGTGAAACTGCTTCGCTTGGATCTGGTACTGTTGGGCCTGAAGTTTCGCATCTTGGTTGGGGCAGATGGTATACTCTTAGAGAGCTCGAGGCGGCCACTAATGGCTTGTGTGAAGAGAACGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTAGGTACTTTGGGAGATGGTACAAGAATTGCTATCAAGAATCTCTTGAATAACAGGGGTCAAGCTGAGAGGGAATTTAAAGTGGAAGTTGAAGCAATTGGAAGAGTAAGACACAAGAATCTTGTCAGGCTGCTAGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTACGAGTACGTTAACAATGGCAATCTAGATCAGTGGCTTCATGGCGACGTCGGGGATGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACGGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCAAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATATTGCTTGACCGTCAGTGGAATGCTAAAGTATCTGATTTCGGGCTAGCCAAGCTTCTTTGTTCCGAAAGGAGCTATGTGACGACCCGTGTAATGGGTACATTTGGCTATGTTGCGCCTGAGTACGCTTGCACGGGAATGTTGAATGAGAAGAGTGATGTTTATAGCTTTGGAATTCTAATTATGGAGATAATTTCTGGGCGGAGCCCTGTCGATTATAGTAGACCTCAAGGAGAGGTCAATTTGGTGGATTGGTTGAAAGCAATGGTTGGAGATAGAAGATCCGAGGAAGTGGTTGACCTCAAGTTGCCGGAGAAGCCTCCTTCCAAAGCTCTAAAACGTGTTCTGCTGGTCGCTCTTCGGTGTGTCGATCCTGATGCTTCGAAGAGGCCGAAAATGGGACATGTCATCCACATGCTTGAGGCAGATAATTTGCTGTCTAATGATGAATACCGGGTCGGTAAGGATGCTTCTCATTCAACTCAAGGTAATCAACACGGTCTGAGACGAGTTAACCATCAGAAAGACGAAGGAACATGTTCTAATATAAGTGAAGGTGACAGTGATGGAAACATTCAACATCCAAGTAGGTGGAGATAA | 1464 | 46.04 | MSIYDSSFFNTALSKRTSIFGLHLWVVIGIVVGALIVLALFLLSLCLTSRKRNRHKNKIRFPKSTADHSPPISKEIQEIVHNAVPDHHHHVQPEIHVEIGKLEHRVVFSDRPSSGESRGAVSETASLGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGTLGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRRSEEVVDLKLPEKPPSKALKRVLLVALRCVDPDASKRPKMGHVIHMLEADNLLSNDEYRVGKDASHSTQGNQHGLRRVNHQKDEGTCSNISEGDSDGNIQHPSRWR | 487 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8497268 | 8500552 | - | CmoCh06G011040.1 | Cmo06g01104 | 384666 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01104 | 487 | PANTHER | OS01G0323000 PROTEIN | 2 | 446 | - | - | |
Cmo06g01104 | 487 | ProSiteProfiles | Protein kinase domain profile. | 157 | 434 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01104 | 487 | CDD | STKc_IRAK | 163 | 429 | - | - | |
Cmo06g01104 | 487 | PANTHER | PROTEIN KINASE SUPERFAMILY PROTEIN | 2 | 446 | - | - | |
Cmo06g01104 | 487 | MobiDBLite | consensus disorder prediction | 443 | 487 | - | - | |
Cmo06g01104 | 487 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 279 | 291 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo06g01104 | 487 | SUPERFAMILY | Protein kinase-like (PK-like) | 136 | 429 | IPR011009 | - | |
Cmo06g01104 | 487 | Gene3D | Transferase(Phosphotransferase) domain 1 | 233 | 444 | - | - | |
Cmo06g01104 | 487 | ProSitePatterns | Protein kinases ATP-binding region signature. | 163 | 185 | IPR017441 | GO:0005524 | |
Cmo06g01104 | 487 | SMART | serkin_6 | 157 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01104 | 487 | Gene3D | Phosphorylase Kinase; domain 1 | 132 | 232 | - | - | |
Cmo06g01104 | 487 | Pfam | Protein tyrosine and serine/threonine kinase | 160 | 428 | IPR001245 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01104 | Cmo-Chr6:8497268 | Cmo07g00711 | Cmo-Chr7:3210008 | 0 | dispersed | |
Cmo16g00107 | Cmo-Chr16:490741 | Cmo06g01104 | Cmo-Chr6:8497268 | 1.26E-87 | dispersed | |
Cmo06g01104 | Cmo-Chr6:8497268 | Cmo14g02120 | Cmo-Chr14:15315376 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74425 | PF07714 | PK_Tyr_Ser-Thr | 9.00E-46 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01104 | - | - | cmos:111449863 | 944.495 |