Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01113 ATGGAAATGGAAGTTGATTGGGATCTTCACGCCGTCGTTAGAGGCTACTCCGCCATGACCTCCGCCGCCTCCTCCTCCGCCGTCTCCTCCGCCGCTGTTCCTTCTTCCGACTCTTACTCTGTTTCTTCCAATTCCAATAACTCTGTTCCTATGGCGTTTGGCAGAGACCAAACGAACCGTATGTTGTCGCTTCAAGATCCGTTTGATGGGTCGAATTGTAATTCTACTGAGGAATTGCAGGAGTTTTTTAACCCCTTTTTACCTAAATCTCAACGCTCTCCTCCACTGCCGCCGCCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCGGTCAAAATTCTGACCCATCAGAAGCAACTACAGAACACCCATCTCCCTAAACAGCTCCATTCAACCTCCGTTTCTGCTCCGAGATCCAAACGCCGGAAGAACCAGTTGAAGAAAGTCTGTCAGGTTCCGGCGGAGGCTCTGTCGTCGGACATTTGGGCTTGGAGAAAATATGGACAAAAACCCATCAAGGGATCTCCATATCCAAGGGGATATTACAGATGTAGTAGTTCAAAGGGTTGCATGGCCCGGAAACAAGTGGAGAGGAACAGATCCGATCCGGGAATGTTCATAGTTACTTACACGGCGGAGCACAACCACCCGGCGCCAACTCATCGGAATTCCCTCGCCGGCTCCACCCGTCAGAAGGCCAACACGCCGACACCCACCGACGTCGGATCGGAAAAACCCGACGCGAAACAGCTCGTTTGCTCGTCTGAAGATCTGAGTACGATCACGGAGAGCAAAGAAGAAGAGAAAGAGGAATCATTGGCGGAAGACGAAGAAGACAACGATCTGGGGGTCTCTGATTTAATCGTCAACGACGATTTCTACGTGGGGTTTGAAGAACTCGACAGTCCTAACGCCGACGACTGCTTTTCCGATGATTTTCCGGCGAGTTTTGGACTTCCATGGCTGTTTAACAATGCTCCAACCGCCACTAGCAGCATTTAA 999 51.35 MEMEVDWDLHAVVRGYSAMTSAASSSAVSSAAVPSSDSYSVSSNSNNSVPMAFGRDQTNRMLSLQDPFDGSNCNSTEELQEFFNPFLPKSQRSPPLPPPPAPPLLSSPAVKILTHQKQLQNTHLPKQLHSTSVSAPRSKRRKNQLKKVCQVPAEALSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKANTPTPTDVGSEKPDAKQLVCSSEDLSTITESKEEEKEESLAEDEEDNDLGVSDLIVNDDFYVGFEELDSPNADDCFSDDFPASFGLPWLFNNAPTATSSI 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8571167 8572483 + CmoCh06G011130.1 Cmo06g01113 384675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01113 332 Pfam WRKY DNA -binding domain 159 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g01113 332 MobiDBLite consensus disorder prediction 268 283 - -
Cmo06g01113 332 MobiDBLite consensus disorder prediction 86 106 - -
Cmo06g01113 332 SMART WRKY_cls 157 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g01113 332 MobiDBLite consensus disorder prediction 212 283 - -
Cmo06g01113 332 MobiDBLite consensus disorder prediction 125 145 - -
Cmo06g01113 332 SUPERFAMILY WRKY DNA-binding domain 155 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g01113 332 MobiDBLite consensus disorder prediction 24 46 - -
Cmo06g01113 332 ProSiteProfiles WRKY domain profile. 152 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g01113 332 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 319 IPR044810 GO:0003700
Cmo06g01113 332 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 3 319 - -
Cmo06g01113 332 MobiDBLite consensus disorder prediction 90 106 - -
Cmo06g01113 332 Gene3D WRKY domain 141 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g01113 332 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01102 Cmo-Chr2:6677813 Cmo06g01113 Cmo-Chr6:8571167 1.00E-31 dispersed
Cmo03g01464 Cmo-Chr3:10534462 Cmo06g01113 Cmo-Chr6:8571167 4.81E-34 dispersed
Cmo06g01113 Cmo-Chr6:8571167 Cmo15g01124 Cmo-Chr15:7806671 1.23E-48 dispersed
Cmo19g01045 Cmo-Chr19:9102316 Cmo06g01113 Cmo-Chr6:8571167 4.32E-29 dispersed
Cmo01g00295 Cmo-Chr1:1404034 Cmo06g01113 Cmo-Chr6:8571167 1.34E-28 transposed
Cmo14g02126 Cmo-Chr14:15377304 Cmo06g01113 Cmo-Chr6:8571167 1.64E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10000 PF03106 WRKY 4.40E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01113 K13425 - csv:101217082 451.825