Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01119 ATGGCTTTCACTGGAACATTGGATAAATGCAAGGCTTGTAATAAGACTGTTTATGTGGTTGATTTGTTGTCTCTTGAAGGCAATCCTTACCATAAGAATTGCTTCAGATGCAGCCACTGCAAAGGCACCCTTTCGATGACCAGCCACTCGTGGATGGACGGCGTCCTGTATTGCAAGCCTCATTTCGATCAACTCTTTAAGGAATCTGGAAATTTCGCAAACTTCCAATCCAAGTCTGAGAAGAAACCTGAACTGACAAGGACCAACAGCAAACTCTCCGCCATGTTCTGTGGGACTCAAGATAGATGTGCTGCTTGCAGTAAAGTAGTTTATCCATTAGAAAAGGTCCGTAGTTCTTCCCCTTTTCTTCTTTACACAACACACATTTTTCTCAAAATTATCAGTCTTGAGGGGGAATGCTACCACAAGAACTGCTTCAGATGTGCTCATGGTGGATGCAATTTGACACACTCTTCTTATGCTGCTCTTGATGGAGTGTTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGGTCAAGGGCAACTATACCCATGTCCTTCAAGCTGCTGCAAACAAGAAAGCCACCATGACCCCGGCCGAACGTGCCGAAAAAGATGGCAAGCCTCAGCCTGATTCCGAGGACGGCGCAGCTACCTTTTAA 663 45.4 MAFTGTLDKCKACNKTVYVVDLLSLEGNPYHKNCFRCSHCKGTLSMTSHSWMDGVLYCKPHFDQLFKESGNFANFQSKSEKKPELTRTNSKLSAMFCGTQDRCAACSKVVYPLEKVRSSSPFLLYTTHIFLKIISLEGECYHKNCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMVKGNYTHVLQAAANKKATMTPAERAEKDGKPQPDSEDGAATF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8616327 8619355 + CmoCh06G011190.1 Cmo06g01119 384681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01119 220 ProSiteProfiles LIM domain profile. 101 179 IPR001781 -
Cmo06g01119 220 PANTHER OS06G0237300 PROTEIN 130 212 IPR045268 GO:0051015
Cmo06g01119 220 PANTHER OS06G0237300 PROTEIN 1 117 IPR045268 GO:0051015
Cmo06g01119 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 147 186 - -
Cmo06g01119 220 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Cmo06g01119 220 Gene3D Cysteine Rich Protein 6 74 - -
Cmo06g01119 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 75 - -
Cmo06g01119 220 MobiDBLite consensus disorder prediction 198 212 - -
Cmo06g01119 220 PANTHER LIM DOMAIN-CONTAINING PROTEIN PLIM2C 130 212 - -
Cmo06g01119 220 PANTHER LIM DOMAIN-CONTAINING PROTEIN PLIM2C 1 117 - -
Cmo06g01119 220 Gene3D Cysteine Rich Protein 97 183 - -
Cmo06g01119 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Cmo06g01119 220 MobiDBLite consensus disorder prediction 196 220 - -
Cmo06g01119 220 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Cmo06g01119 220 SMART lim_4 102 172 IPR001781 -
Cmo06g01119 220 SMART lim_4 9 61 IPR001781 -
Cmo06g01119 220 Pfam LIM domain 135 176 IPR001781 -
Cmo06g01119 220 Pfam LIM domain 10 64 IPR001781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01119 - - K09377 csv:101204422 334.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01119 Cmo14g02084 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01119 Cmo-Chr6:8616327 Cmo14g02084 Cmo-Chr14:15147249 9.21E-108 dispersed
Cmo06g01119 Cmo-Chr6:8616327 Cmo06g01123 Cmo-Chr6:8648733 3.93E-111 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g362 . . . . . . . . Cmo06g01119 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0769 . . . . . . . . . . . . . . . . Cma06g01093 . Car06g00928 . Cpe08g00525 . . . . . . . . . . . . . . . . . . .
Vvi15g927 . . . . . . . . . . Cma06g01093 . Car06g00928 . . Cpe08g00525 Cpe03g01718 Bhi01g00390 . . . . . . Cla05g00184 Cam05g0199 Cec05g0198 Cco05g0207 Clacu05g0196 Cmu05g0188 Cre05g0249 Cone14ag0344 . . Cone18ag1093 Lsi05g02023 . . Cme06g00196 . Blo16g00597 Bda11g00261 . Bpe13g00938 . Bma02g01137 Bma06g01206 . Cmo06g01119 Cmo14g02084 . . . . . . . . . . . . . . . . . . . . . Csa03g00907 Chy06g00188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002330 3 2 2 2 2 1 3 2 2 1 1 1 2 2 2 4 2 2 4 1 2 2 2 1 1 2 2 6 2 0 61
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10002 PF00412 LIM 6.80E-13 CL0167 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01119 Cmo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0