Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01129 ATGCGTGATTCAATCCCACTGTACTCTTCTCCCATCCGGACGGTGGATAATTCGCCTCTGCTTGGCTATTCCGTCGCCGATGGATTCTTCCGATCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCTCTTCGTGGCGCGGTTCGTCTTCTCCGCCGTGCAAGTGGCCGGCAGATGATGCTTCAAGAGCCCTCCGTTCGTGTTCGTGAAACCGCCGCCGAGCAGCTGGAGGAACGGCAGAGCGATTGGGCGTACTCGAAGCCGATAATCCTCTTGGACCTTCTATGGAACTTGGTTTTCGTCGCCATTAGTTTCACTATCCTAGGGCTCAGCACGAGCGAAAATCCTTCTGTGCCGCTTAGGTTTTGGATCATTGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCAGCTGAGTATAAGCGGCGGCACTTGACGAGAGAGCCCGCCGGATTGGACCGTGGCAGCGACTGGATGAGCGGCGATGACTCGAATTCCGCCTCTGGAAGTGATGGAGATGAAGAGCTTACCGTGAATGAAGAAGAACCAAGCAATCTTGTGAAGCATATTGAATCTGCAAATACCTTGTTCTCTTTCATCTGGTGGCTGCTAGGATTTTACTGGGTCACTACTGGAGGCCAAGAATTGATAGATGATTCACCTCAGCTATACTGGTTTTTCCATGGTCTACATTGCAGGCTTTGTATTACATTCCTTGCTTTCGACGTCGTGTTTGTTCTGATTTGCGTCGCAATTGCCTGTCTTGTTGGTGTTGCTATTTGCTGCTGTCTTCCTTGCATAATTGCTATCTTGTATGCGGTTACCGATCAGGTAGATTCAATGAGCTTTTGTTCAATTTCGTGGGTCGATATTTTAATCCCTTCTAGCGGCCGGTCATGTTTGATCAGTATAACGCAACCATATAGGTTCTATTGTAGTTATTATCGACTTATGCTAGAGCGTGACAATGTTGTCAAGAACGGAGAATGTTCCTCGACTTTTGAGTTTGTGATGATACTTATACTGTTGCTACTGTCAACTCACCGTGATTCGTTTCTAACCCGCAAAATTCAGGAAGGAGCAACGAAGGAGGAGATCGATCGCTTACCGAAGTACATATTCAACAGAACATGTGATGTTGAGAAAGGGATTGGTGATACTCAAGAATCTACTGGAGGAATAATGACTAAATGTGACACTGATGCACCTACCAAGCATTTTCTTCGTCCCGAAGATTCTGAGTGTAGCATCTGCCTCAGCGCTTACGAAAACGAAACGGAGCTACGAGAGCTGCCCTGTAACCACCATTTCCACTGCAACTGCATCGACAAATGGCTACACATCAATGCAACCTGCCCGCTCTGCAAGTTCAACATATTGAAGCCGAACGGTTCCAGTAGCGAAGAAGTGTGA 1416 47.53 MRDSIPLYSSPIRTVDNSPLLGYSVADGFFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLQEPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLVFVAISFTILGLSTSENPSVPLRFWIIGYALQCIIHMSCVAAEYKRRHLTREPAGLDRGSDWMSGDDSNSASGSDGDEELTVNEEEPSNLVKHIESANTLFSFIWWLLGFYWVTTGGQELIDDSPQLYWFFHGLHCRLCITFLAFDVVFVLICVAIACLVGVAICCCLPCIIAILYAVTDQVDSMSFCSISWVDILIPSSGRSCLISITQPYRFYCSYYRLMLERDNVVKNGECSSTFEFVMILILLLLSTHRDSFLTRKIQEGATKEEIDRLPKYIFNRTCDVEKGIGDTQESTGGIMTKCDTDAPTKHFLRPEDSECSICLSAYENETELRELPCNHHFHCNCIDKWLHINATCPLCKFNILKPNGSSSEEV 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8677999 8680953 - CmoCh06G011290.1 Cmo06g01129 384691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01129 471 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 359 467 - -
Cmo06g01129 471 SMART ring_2 416 456 IPR001841 -
Cmo06g01129 471 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 29 279 - -
Cmo06g01129 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 464 IPR013083 -
Cmo06g01129 471 SUPERFAMILY RING/U-box 407 463 - -
Cmo06g01129 471 PANTHER TARGET OF ERK KINASE MPK-1 359 467 - -
Cmo06g01129 471 MobiDBLite consensus disorder prediction 154 180 - -
Cmo06g01129 471 Pfam Ring finger domain 415 457 IPR001841 -
Cmo06g01129 471 PANTHER TARGET OF ERK KINASE MPK-1 29 279 - -
Cmo06g01129 471 MobiDBLite consensus disorder prediction 160 174 - -
Cmo06g01129 471 CDD RING-H2_RNF111_like 415 459 - -
Cmo06g01129 471 ProSiteProfiles Zinc finger RING-type profile. 416 457 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01129 - - - cpep:111786609 462.225
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01129 Cmo14g02075 CST
Cmo06g01129 Cmo16g01058 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01129 Cmo-Chr6:8677999 Cmo16g01058 Cmo-Chr16:7427147 5.07E-43 dispersed
Cmo14g02075 Cmo-Chr14:15111582 Cmo06g01129 Cmo-Chr6:8677999 3.56E-63 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g378 . . . . . . . . Cmo06g01129 Cmo16g01058 . . . . . Cpe14g00834 . Bhi11g00237 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00096 . . . Cma06g01102 . Car06g00939 Car16g00969 Cpe08g00516 . . . . . . . . . . . . . . . . . . .
Vvi15g565 . . . . Bpe14g01000 . . . . . Cma06g01102 Cma14g02015 Car06g00939 Car14g01816 . Cpe08g00516 Cpe03g01711 Bhi01g00407 . . . . . . Cla05g00192 Cam05g0209 Cec05g0210 Cco05g0218 Clacu05g0207 Cmu05g0199 Cre05g0259 . . . Cone18ag1101 Lsi05g02011 . . Cme06g00207 . . . Bda13g00332 . . Bma02g01042 . . Cmo06g01129 Cmo14g02075 . . . Car17g00511 . . . . . . . . . . . . . . . . . Csa03g00920 Chy06g00197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000993 3 3 3 3 3 2 4 2 2 2 2 2 4 2 2 3 2 3 4 2 2 3 2 2 3 2 2 7 6 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01129 Cmo_Chr06 FPKM 3.56155 3.513845 3.416634 3.845837 7.607405 7.451647 6.89505 5.003081 5.495576 5.076349