Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01143 ATGAAATCTGATTTTACGTTTCGGCTTCATCCAAACACAATCTTATCTCCGGTAACCACCCCACTCCGAACAATGGTGAGAGGCAAAACTCAGATGCGGCGGATCGAAAACGCCACAAGTCGCCAAGTCACGTTTTCGAAGCGCCGCAATGGGTTGCTCAAGAAGGCCTTTGAGCTCTCAGTGCTCTGTGAAGCTGAAGTGGCCCTCATCATTTTCTCTTCTGCTGGGAAGCTTTGTGAATTTGCTAGCTCAAGCATGCAGGCCACAGTGGAGCGATTTCAAAGGCATACAAGGGAAACCCATCATCTTGAACGTTCTTTACCTCATCACCATGATCAAGCTGATGAGGCTGCAAATTTGTTGAAGGAGATAGAGTCACTTGAAGTTTCAAAGAGGAAATTGTTTGGACAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATAGAACAGCAGCTTCATAGGAGCTTAGCCCATGTTCGAGCTACAAAGCATGAGGCTTACAAGGAACAGATTGATCAACTGAAAGAAAAGGAGAAATATTTGGCAGCTGAAAATGAAAAGCTAGCTAAAAAGTATTTGGTTCAACTCGAGCCTCGACGATCACTAACTCAAGTAGGAGAAGTTTCACCGAATCTTGAAACCAGCTCGACTTTCGACGTTGAAACGGAATTGTTCATCGGGCCACCAAAGTCGAGATCGAAGTGA 711 44.73 MKSDFTFRLHPNTILSPVTTPLRTMVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSAGKLCEFASSSMQATVERFQRHTRETHHLERSLPHHHDQADEAANLLKEIESLEVSKRKLFGQGLGSSSYEELQQIEQQLHRSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRRSLTQVGEVSPNLETSSTFDVETELFIGPPKSRSK 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8774826 8779967 + CmoCh06G011430.1 Cmo06g01143 384705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01143 236 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Cmo06g01143 236 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Cmo06g01143 236 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Cmo06g01143 236 Gene3D - 38 117 IPR036879 GO:0003677|GO:0046983
Cmo06g01143 236 PANTHER MADS BOX PROTEIN 25 232 - -
Cmo06g01143 236 Coils Coil 166 193 - -
Cmo06g01143 236 ProSiteProfiles K-box domain profile. 110 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo06g01143 236 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Cmo06g01143 236 SUPERFAMILY SRF-like 27 100 IPR036879 GO:0003677|GO:0046983
Cmo06g01143 236 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Cmo06g01143 236 CDD MADS_MEF2_like 27 101 IPR033896 GO:0000977|GO:0045944
Cmo06g01143 236 PANTHER MADS-BOX PROTEIN SOC1 25 232 - -
Cmo06g01143 236 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Cmo06g01143 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
Cmo06g01143 236 Pfam K-box region 110 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01143 Cmo15g01250 CCT
Cmo02g01534 Cmo06g01143 CCT
Cmo06g01143 Cmo08g00912 CCT
Cmo06g01143 Cmo08g00912 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01143 Cmo-Chr6:8774826 Cmo08g00912 Cmo-Chr8:5937954 5.87E-71 dispersed
Cmo15g01462 Cmo-Chr15:9923270 Cmo06g01143 Cmo-Chr6:8774826 7.90E-07 dispersed
Cmo14g02060 Cmo-Chr14:15036993 Cmo06g01143 Cmo-Chr6:8774826 8.10E-88 wgd
Cmo15g01250 Cmo-Chr15:8582334 Cmo06g01143 Cmo-Chr6:8774826 9.77E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10004 PF01486 K-box 1.30E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01143 - - csv:101209501 303.138