Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01150 | ATGAAAAAATCTCTGATGAAGGAAGAGAATGGAACTCCAAAGCGGCAATGGTCCTTGCAAGACTTCGATGTAGGAAAGCCCCTTGGCAAAGGAAAATTCGGCAGAGTCTATCTAGCAAGAGAAGTCAAGGAGCTCCGATTTGATTTTCAGAGCAAGTATATAGTGGCACTGAAGGTAATTTTCAAGGAGCAGATGGAGAAGTACAGGATTCATCATCAGTTGAGGAGAGAGATGGAGATCCAAACCAGTCTTCGGCACCCCAACATCCTGCGCCTCTATGGATGGTTTCATGATGCTGAACGTATTTTCTTGATATTGGAATACGCTCACCGCGGTGAGCTTTATAGGGAGCTTAGGAAAAGTGGTCATCTCAGCGAGCAGCAAGCTGCCACCTACATTTTAAGTCTCACACAAGCATTGGCATACTGCCATGAGAAGCATGTGATTCACAGGGATATTAAGCCAGAAAATTTGCTGCTTGATCATGAGGGCCGGCTGAAAATTGCAGATTTTGGATGGTCTGTACAGTCGAGAAGCAAGAGACATACCATGTGTGGAACTCTGGATTATTTAGCCCCAGAAATGGTGGAGAATAAAGCTCACGACTATGCAGTAGATAATTGGACTTTGGGCATTCTCTGCTATGAGTTCCTTTATGGAGTGCCTCCATTTGAAGCTGAAAGTCAAAGCGACACGTTTAAAAGGATAATGAAGGTCGACTTGAATTTTCCCTCGACCCCTCACGTTTCTTCCGAAGCAAAAGATCTAATTGGCCGGCTCTTGGTGAAGGATTCCTCTAGAAGACTTTCACTTCAGAAGATAGTGGAGCATCCCTGGATAATCATGAATGCAGATCCATCTGGTATTTGCAGTAGCAGCAGCATTCATGATTTAATCAAAATGTTGGGAAAAGTTGTTAGTCGCATTCTCACAGTGATACAGGCTTCCCTAGTGCGATTTCTAGAGCCAACCGATGAACAAACGAGGTTTATCGACGGCGTCACCGGAGCTGATACCTCGTCGATTTCTGCCCGATTCTGCTCTGTTTTCATCGCCATCCTCAGCACGGTCATTGTGGCTTCATCAGCCTTCCAAAGGCTCTCATCTCAATTTCTCAAGGAACTCGACAATACGGCCATGGAGACCAATCCCGCCGCCGCCGTCGTCGACGTTAGCAGTACCCCAAGCGTTCCGCCGGAGAAACGGAACCGTTCTATCTTCAACGTCCCGCCGGACTTATTCGCTTCCTGCAAACTCCTTCGTTCTCCACATTCATACACCTCATCAACCAGCGGCAGCTACAGCTCAAGCGCAGAAAATCCAGTCGATTCGGAGCAGAATTCTAGGGATTTCAAAGAAAGTTCCGTTGCCCAAAGATGGACCTGCAACACATGCAAGGCCGAGTTCGAATCCCTCCTCGACCAGCGTTCGCACTTCAAATCCGACCTCCACCGGTTCAATGTGAAGCTAAGCATTGCTGGCAAGAATATTGTGAAGGAGGATGATTTTGATGAGCTGACATCTGATTCTTTCAGAGACTTTGATGTGTCAAGTATTTCTGGATCAGAGGACGAAACAGAGAAGGAGATTTACCCTCGTAATGAAGGGTCTAAGGTAACAAATGATAGTGTGAACAAGAAGAAGTTGTTCGTTCATCTTCAAACAGGTGAAAGAGTTTCGGTTTGGAAGTGTTTGCTCATAAATGAGTTGGATAGTATTTCGTATGAGGATGATAAAACATCGGTTGGCGGTAATGGTATTCATTCACAAAATCTTAGAGAGAATGAAGTCATAGCGAGATTGAAATATCTAAATCACGAGCCAAGAGATGGCACCCATTTGCGGATAGTGTTGCTTGCAAGTGGTGGGCACTTCGCCGGTTGTGTTTTCGACGGGAACTCGGTTGTGGCTCATAAAACCTTTCACAGATATGTAGTGAGAGCCAAGTCTGGAAAGAAGCAGTCATCAAAAGATGCAAGTGGCAAAACGATCAGTTCTGCCGGGGCTTCTCTTCGTCGTCATAATGAACTCGCGTTGAAGAAGGAAATTCAAGATCTCCTAGCTGCTTGGAAGTCCTATTTTAATGCTTCTTCTTGCGTTTATATTTATGCTCCTTCAAACAACCGGCAATTACTTTTTAATGGGGATAAGCCATATTTTAGCGATCAGCGTTCTGCTGTTCGGAATATTCCTTTGACTGTTCGAAGGCCTACGTTAAAAGAAGCTCGACGTGTTTATGAACAATTGGTGCAAGTAGCATATGAAGTAGAAGATAAGGAAGTATTGTCCACCAGTGGGCACAATTCACCATCAAGTGTAGTTACAACAGACAATGGCACCCAAGATATTGGTGAACCGAAAGTTATTGGAGACTTGGAAAAGGATGCTTGTACACATCTTGAAGAACCTGTTGAACATCCAATAACTAGAGAGAGTGAAAGTGAAAGTACTTGTATAACTACACCTCTGCATGAAGCATCACAGACTGGAAATGCAGATAAGGTTTTGGAACTCCTTGAACAGGGTCTTGATCCTTGCGCCAAAGACGAACGAGGACGGACTCCTTACATGCTAGCAACTGAAAAGGAAGTCCGAAATAGCTTCAGAAGGTTCATGGCTTCAAACCTTGATAAGTGGGATTGGAATGCTGCTAAAGTTCCGAGCGCGCTAACCAAGGAAATGGAGGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGCGAAAGGCACGAGCGAAGGAATTGAAGAAGTTAAAGAAAGAAAAGGCCAAGAAAGCACAGGCCGAGGCCGAGGCTGCCGAATCTCAAAAAGCTGCGAAGGCGGAACACGGCAGAGGAATCGGCTCTATTTTGAATACTCGAGCTGAATCAACCAGTGGAAAACTGATTACCAAAGAGATGGTACAGGCTGCCGAGCGTGAAAAGAGAGCAGCAGCTGCCGAGAGGAGAATCGCAGCCATGGCTGCAGCTGCAGCCACCAATGGTTCCTCGTCGACTATTCCAAACAGCTCACAGACTAAAACCGGGTTAGCCGGGGACATCAACTGTTCCTGTTGCGGTACGTCGCTAGCTGGTAAGGTTCCTTTCCACCGGTACAACTATAAATATTGTAGCTCAACATGCATGCATGTACACAAAGAGGTCCTTGAAGAAAACTAG | 3162 | 45.57 | MKKSLMKEENGTPKRQWSLQDFDVGKPLGKGKFGRVYLAREVKELRFDFQSKYIVALKVIFKEQMEKYRIHHQLRREMEIQTSLRHPNILRLYGWFHDAERIFLILEYAHRGELYRELRKSGHLSEQQAATYILSLTQALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGVPPFEAESQSDTFKRIMKVDLNFPSTPHVSSEAKDLIGRLLVKDSSRRLSLQKIVEHPWIIMNADPSGICSSSSIHDLIKMLGKVVSRILTVIQASLVRFLEPTDEQTRFIDGVTGADTSSISARFCSVFIAILSTVIVASSAFQRLSSQFLKELDNTAMETNPAAAVVDVSSTPSVPPEKRNRSIFNVPPDLFASCKLLRSPHSYTSSTSGSYSSSAENPVDSEQNSRDFKESSVAQRWTCNTCKAEFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFDELTSDSFRDFDVSSISGSEDETEKEIYPRNEGSKVTNDSVNKKKLFVHLQTGERVSVWKCLLINELDSISYEDDKTSVGGNGIHSQNLRENEVIARLKYLNHEPRDGTHLRIVLLASGGHFAGCVFDGNSVVAHKTFHRYVVRAKSGKKQSSKDASGKTISSAGASLRRHNELALKKEIQDLLAAWKSYFNASSCVYIYAPSNNRQLLFNGDKPYFSDQRSAVRNIPLTVRRPTLKEARRVYEQLVQVAYEVEDKEVLSTSGHNSPSSVVTTDNGTQDIGEPKVIGDLEKDACTHLEEPVEHPITRESESESTCITTPLHEASQTGNADKVLELLEQGLDPCAKDERGRTPYMLATEKEVRNSFRRFMASNLDKWDWNAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLKKEKAKKAQAEAEAAESQKAAKAEHGRGIGSILNTRAESTSGKLITKEMVQAAEREKRAAAAERRIAAMAAAAATNGSSSTIPNSSQTKTGLAGDINCSCCGTSLAGKVPFHRYNYKYCSSTCMHVHKEVLEEN | 1053 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8812151 | 8820940 | + | CmoCh06G011500.1 | Cmo06g01150 | 384712 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01150 | 1053 | MobiDBLite | consensus disorder prediction | 897 | 911 | - | - | |
Cmo06g01150 | 1053 | MobiDBLite | consensus disorder prediction | 763 | 782 | - | - | |
Cmo06g01150 | 1053 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 148 | 160 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo06g01150 | 1053 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 285 | IPR011009 | - | |
Cmo06g01150 | 1053 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 462 | 484 | IPR013087 | - | |
Cmo06g01150 | 1053 | ProSiteProfiles | Ankyrin repeat profile. | 821 | 850 | IPR002110 | GO:0005515 | |
Cmo06g01150 | 1053 | Gene3D | - | 813 | 934 | IPR036770 | - | |
Cmo06g01150 | 1053 | MobiDBLite | consensus disorder prediction | 517 | 538 | - | - | |
Cmo06g01150 | 1053 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 112 | - | - | |
Cmo06g01150 | 1053 | Pfam | Vms1-associating treble clef domain | 1015 | 1048 | IPR041540 | - | |
Cmo06g01150 | 1053 | Pfam | Protein kinase domain | 23 | 280 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01150 | 1053 | Coils | Coil | 894 | 944 | - | - | |
Cmo06g01150 | 1053 | Gene3D | Transferase(Phosphotransferase) domain 1 | 113 | 301 | - | - | |
Cmo06g01150 | 1053 | ProSiteProfiles | Protein kinase domain profile. | 22 | 280 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01150 | 1053 | SUPERFAMILY | Ankyrin repeat | 821 | 873 | IPR036770 | - | |
Cmo06g01150 | 1053 | MobiDBLite | consensus disorder prediction | 426 | 450 | - | - | |
Cmo06g01150 | 1053 | MobiDBLite | consensus disorder prediction | 518 | 535 | - | - | |
Cmo06g01150 | 1053 | MobiDBLite | consensus disorder prediction | 761 | 784 | - | - | |
Cmo06g01150 | 1053 | CDD | STKc_Aurora | 21 | 280 | - | - | |
Cmo06g01150 | 1053 | PANTHER | ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 400 | 1049 | - | - | |
Cmo06g01150 | 1053 | Pfam | Bacteroidetes VLRF1 release factor | 616 | 754 | IPR041175 | - | |
Cmo06g01150 | 1053 | ProSitePatterns | Protein kinases ATP-binding region signature. | 28 | 58 | IPR017441 | GO:0005524 | |
Cmo06g01150 | 1053 | SMART | serkin_6 | 22 | 280 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g01150 | 1053 | MobiDBLite | consensus disorder prediction | 892 | 951 | - | - | |
Cmo06g01150 | 1053 | MobiDBLite | consensus disorder prediction | 922 | 942 | - | - | |
Cmo06g01150 | 1053 | MobiDBLite | consensus disorder prediction | 426 | 444 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01498 | Cmo-Chr1:11583006 | Cmo06g01150 | Cmo-Chr6:8812151 | 6.92E-130 | dispersed | |
Cmo06g01150 | Cmo-Chr6:8812151 | Cmo03g01419 | Cmo-Chr3:10261849 | 3.12E-51 | dispersed | |
Cmo06g01150 | Cmo-Chr6:8812151 | Cmo09g00607 | Cmo-Chr9:3017440 | 1.27E-130 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74426 | PF00069 | Pkinase | 8.70E-71 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01150 | K26089 | - | csv:101216211 | 983.786 |