Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01158 ATGGAAGAGAGAGAGGCCATAAGTACAGGAGTAACTGTGATAGGAGCCGAAGCTCCGTCGGCTTATCATGTGGCTCCGAGAACCGATAACCCGCCGCCGGCCGGTGGTTCTCCTACCGTCGCCGCCACGCCGGTCAGCGTTGGGTTGCCTGCTAGTGGAACCACAGGGAAGAAGAAGCGAGGCAGACCTAGGAAATACGGCCCGGATGGAACGATCACCATGGCATTGTCGCCATTGCCGCTTTCGTCCTCAGCTCCAGGGGCCGGCGGGTTTTCCATTACCAAGCGAGGGAAGAGCCGGTTAGGCGGCTCCGATTTGAAGCAAAACAAGAAAATGGGAATGCAGTATATAGGCCAATGGAATGCATGTAATGTCGGTACAAACTTCATGCCTCATGTCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCTTTTTCTCAACAAGGTCCTCGAGCAATCTGTGTTCTTTCTGCGAATGGATTAGTTTCAAATGTCACTCTTCGGCAGCCCGATTCTTCGGGCGGTACTTTAACATATGAGGTACGTCAAGTCCATGAGTCTACTGGCATTATTTCTGCTGTGCTTGTCAAATCTTCAAGAAGGATTGTACATTGGCAGGGTCGTTTCGAGATACTTTCCCTATCTGGATCATTCACTCCTTCTGAAAACCAAGGAGCGAGAAGCAGGTCGGGTGGGTTGAGCGTCTCCTTGGCAAGCCCGGACGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTGATAGCTGCAAGCCCTATACAGGTACCAAGCTTCCTTCTTACATCATTTGAAAAGGCAAAACTTGTTGTGGTAGGGAGTTTTGTACCAACCAGCCAACCCGATCCGAAAGTAAAGAAACCGAAGCCCGAGTTGTTGTTAACTGCAGCCCCTGTTGCTGCAGCGCCAAGCACGACACCAGCCACCACCGTGCCTACTTCCTCCAATGCTGATACAGACGACGGGTTAAACGGTAACGGTCAGCAAACTCCTGAATCCCAAAAACCGACTACTTTCCCTCCTGCTAGTTTCGTGAGAGAGCGAGACGATTGGGGTGCTGCCAATACTGCTGTGCATTCCTTGCAGGAGCCGAGAAATACCGGTACCGACATCAATATATCGCTGCCGGACTAA 1161 51.51 MEEREAISTGVTVIGAEAPSAYHVAPRTDNPPPAGGSPTVAATPVSVGLPASGTTGKKKRGRPRKYGPDGTITMALSPLPLSSSAPGAGGFSITKRGKSRLGGSDLKQNKKMGMQYIGQWNACNVGTNFMPHVITVNAGEDVTMKIISFSQQGPRAICVLSANGLVSNVTLRQPDSSGGTLTYEVRQVHESTGIISAVLVKSSRRIVHWQGRFEILSLSGSFTPSENQGARSRSGGLSVSLASPDGRVVGGGVAGLLIAASPIQVPSFLLTSFEKAKLVVVGSFVPTSQPDPKVKKPKPELLLTAAPVAAAPSTTPATTVPTSSNADTDDGLNGNGQQTPESQKPTTFPPASFVRERDDWGAANTAVHSLQEPRNTGTDINISLPD 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8884280 8888449 + CmoCh06G011580.1 Cmo06g01158 384720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01158 386 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 190 385 - -
Cmo06g01158 386 MobiDBLite consensus disorder prediction 368 386 - -
Cmo06g01158 386 MobiDBLite consensus disorder prediction 18 107 - -
Cmo06g01158 386 MobiDBLite consensus disorder prediction 306 386 - -
Cmo06g01158 386 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 266 - -
Cmo06g01158 386 MobiDBLite consensus disorder prediction 311 349 - -
Cmo06g01158 386 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 186 - -
Cmo06g01158 386 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 265 IPR005175 -
Cmo06g01158 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 190 385 IPR039605 GO:0003680
Cmo06g01158 386 CDD DUF296 131 245 IPR005175 -
Cmo06g01158 386 Gene3D - 131 281 - -
Cmo06g01158 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 186 IPR039605 GO:0003680
Cmo06g01158 386 ProSiteProfiles PPC domain profile profile. 126 289 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01158 Cmo15g01234 CCT
Cmo06g01158 Cmo15g01234 ECH
Cmo06g01158 Cmo16g01081 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01158 Cmo-Chr6:8884280 Cmo16g01081 Cmo-Chr16:7648276 1.35E-77 dispersed
Cmo14g02040 Cmo-Chr14:14913849 Cmo06g01158 Cmo-Chr6:8884280 6.00E-179 wgd
Cmo15g01234 Cmo-Chr15:8497053 Cmo06g01158 Cmo-Chr6:8884280 4.67E-82 wgd
Cmo02g01551 Cmo-Chr2:8983157 Cmo06g01158 Cmo-Chr6:8884280 4.93E-92 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01158 - - cpep:111801216 549.28