Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01175 ATGCCCTTTCCCTTTGCAACACCTCTTCTCCTCTTCATAGCCATCATGGCTTTCTCTATTTCTTCGTTAGACGAGCCGGACGCGGTTCGGTTGTTGCGGACCGGAATTGTGAAAGCCAGATCCGACATATATAATGTGAAACGACGTCGCTTTGAACGTGGGAATGTGCAGGCCGCACTTGGCGATTGCCATACGCTCTACGAGGAAGCCGACAGCCGGCTTGCCGCGATGTTAGTTGGGGAGAATTATTCAGCGGATGATGCTCGGATATGGCTCAGCGCCGCCGTGGCTAATCATCGGAGTTGTTTGGATGGCTTGGAAGAAGTCGGCGCTGTGCCGGCGGCGGATGGGAATAACTTGACCATGTTGCTCACCGGAGCTCTGCATTTATACGGCAAAATTGCCGCCGTGGAGGAGCTTACCACGTTGGATATTCCAATACGGGAACGAGTGGAGAAAGAGAGATCGAGGGAAAACTGGAGAATCAACTTGGCGAAATGGAATGCGGCGACGTCGAAGCCGGACTATGTGGTGGCGATGGACGGCTCCGGCACCCACACAACCATAAACGGCGCGGTGGCGGCTCTGGCCAGAGATGGCCGTAGACGGCGGTCGGAGAGGGTGGTGATATACGTGAAAGCCGGAGTTTACACGGAGAATGTGGAAATCGGAATGCAGTTGAAGAACGTCATGGTCGTCGGCGACGGCGCTGACAAAACCATCGTCACCGGTAACCGCAACGTCCCGGACGGCGCCACCACTTACAGCTCAGCTACATTTGGCGTTTCCGGTGACGGATTCTGGGTAAGAGACATAACATTCGAGAACACCGCCGGACCGGAAAAGCAACAAGCGGTGGCGCTACGGCTGAATTCCGACCTCGCCGTCGTATACCGGTGCACAATAAAAGGCTATCAGGACACCCTGTTCCTCCACTCCCTCCGTCAATTCTACCGCGACTGCCAAATCTACGGCACCATAGATTTCATCTTTGGCAACGCCGCCGCCGTTCTCCAAAACTGCGACATCTTCGTCCGACGTCCGATACGCCACCAGGCCAACATGATAACGGCCCAAGGCCGCGACGATCCAGCCGAGGCCACCGGAATTTCGATTATCAGCTGCAGAGTCAGGGCGGCGCCCGAACTCGCCGCCGTCAAGGGCGATTTCAGGACCTACCTCGGTCGGCCGTGGAAGAGATTTTCAAGGACGGTGGTTATGACGACGGATTTGGACGGATTAATCGACCCGAAAGGGTGGGGAGAATGGAGGGGCGATTTTGCAATTTCCACTCTGTTTTACGCTGAGTTTAAGAACACTGGCGGTGGTTCTTCTACTAGATTTAGGGTTCATTGGCCGGGATTTCATGTCCTCCGTAGCGCGGAGGAGGCGCGGCGTTTCACGGTGGCTGAGTTTCTTCACGGTGACGCTTGGATTCCGGCCACCGGCGTGCCATTCGAGGCTGGAGTTTGA 1473 55.74 MPFPFATPLLLFIAIMAFSISSLDEPDAVRLLRTGIVKARSDIYNVKRRRFERGNVQAALGDCHTLYEEADSRLAAMLVGENYSADDARIWLSAAVANHRSCLDGLEEVGAVPAADGNNLTMLLTGALHLYGKIAAVEELTTLDIPIRERVEKERSRENWRINLAKWNAATSKPDYVVAMDGSGTHTTINGAVAALARDGRRRRSERVVIYVKAGVYTENVEIGMQLKNVMVVGDGADKTIVTGNRNVPDGATTYSSATFGVSGDGFWVRDITFENTAGPEKQQAVALRLNSDLAVVYRCTIKGYQDTLFLHSLRQFYRDCQIYGTIDFIFGNAAAVLQNCDIFVRRPIRHQANMITAQGRDDPAEATGISIISCRVRAAPELAAVKGDFRTYLGRPWKRFSRTVVMTTDLDGLIDPKGWGEWRGDFAISTLFYAEFKNTGGGSSTRFRVHWPGFHVLRSAEEARRFTVAEFLHGDAWIPATGVPFEAGV 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8988503 8991078 - CmoCh06G011750.1 Cmo06g01175 384737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01175 490 CDD PMEI-like_4 48 134 - -
Cmo06g01175 490 SUPERFAMILY Pectin lyase-like 170 488 IPR011050 -
Cmo06g01175 490 Gene3D - 169 490 IPR012334 -
Cmo06g01175 490 ProSitePatterns Pectinesterase signature 2. 323 332 IPR033131 -
Cmo06g01175 490 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 12 489 - -
Cmo06g01175 490 PANTHER PECTINESTERASE 12 489 - -
Cmo06g01175 490 Pfam Plant invertase/pectin methylesterase inhibitor 30 128 IPR006501 GO:0004857
Cmo06g01175 490 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 134 IPR035513 -
Cmo06g01175 490 Pfam Pectinesterase 175 476 IPR000070 GO:0030599|GO:0042545
Cmo06g01175 490 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 113 IPR035513 -
Cmo06g01175 490 SMART PMEI_2 8 130 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01175 Cmo-Chr6:8988503 Cmo15g01008 Cmo-Chr15:5577017 1.61E-138 dispersed
Cmo06g01175 Cmo-Chr6:8988503 Cmo06g01176 Cmo-Chr6:8999851 1.04E-123 tandem
Cmo14g02028 Cmo-Chr14:14842482 Cmo06g01175 Cmo-Chr6:8988503 3.84E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01175 K01051 - csv:101217635 726.472