Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01176 ATGGCAGCCATTAAAAGCGTTCTCGTTCTTGTTCTTGTTCTTGGGTCGGTCATTTTTGCTTACTCGGATGACGAAGTGAAAAATTGGTGCAGCCAAACGCCATATCCAGCTCCATGTGAGCATTTTCTCACGGCAAAAAAAACGGCCACAGAAAAAAACCGGCCAATCGCTTCAAAATCCCACTTCCTTAAAGTTCTGGTCGAATCGGCCATCGAGCGAGCCGTTTTGGCCCAAAAGAACGCCGTCGCTCTCGGCCCAAAGTGCCAAAACGACCGAGAAAAATCTGCATGGACCGACTGTATCGAGCTCTACGACCAAATCATTCACCGGCTCAACCGGACTGCCGGTCGGTGCTCTCCGGTCGATGTTCAGACCTGGCTCAGTGCTGCTCTCACAGCTCTCGACACGTGTCAAGCTGGGTTTGAGGAGCTTGGGGTTTCGGCTTTCGGCTACTCTTTAACGGCTAATAATGTTTCCAAGCTGATTAGTGATGGGTTGTCGGTGAATAAGCCGGCTTCGGCTGAGGGGTTTGAGCCGCCGAGTATGAATGAAGGGTTTCCGACGTGGGTTAAGCCGGGAGAAAGGAAGCTGTTGCAGTCGAGCGCTCCGAATGCTAACGTGGTGGTGGCGAAGGATGGGTCTGGGAGATTTAGGACGGTGAGTGAGGCGGTCGCCGCCGCGAAGGGCGGAGGAAGGTTTGTGATTTATGTGAAGGCCGGGGTTTATAGTGAGAATGTTGAGATTAAGGCTAAGAATGTTATGTTGATCGGCGATGGCATCGGAAAAACTATCATCACCGGAAGTAGGAGCGTCGGCGGCGGTTCCACCACTTTTAAATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCACGAGACATAACTATCAGAAACACCGCCGGAGCATCAAACCATCAAGCGGTGGCGCTCCGTTCCGGCTCAGACCTCTCCGTCTACTACCGCTGCAGCTTCGAAGGCTTTCAAGACACTCTCTACGTCTTCTCCGAACGCCAATTCTACAGACAATGCGACATTTACGGCACCGTCGATTTCATTTTCGGCAACGCCGCCGTCGTAATCCAAGATAGCAACATCATCGCCCGCGATCCTCCAAACAAGACGATCACGATCACCGCCCAAGGCCGCTCAGATCCGAATCAGAACACCGGAATCTCGATCCACAATTGCAGAATCACGTCGGCCGGTGGCCTCAGCGGCGTTAAGGCCTTTTTAGGCCGACCGTGGAGGGAGTATTCGAGAACTGTAGTCATGACATCGTCGATAGGAGGGTTTATCAGTCCGGCGGGGTGGATGGAGTGGAGCGGTAATTTTGCGCTAAATACTCTGTATTACGGCGAGTATAAGAACACCGGTGCGGGAGCTTCGACGGCGAATCGAGTGAAGTGGAAGGGTTATCGTGTAATTACCAGCGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATTGCCGGAGGATCTTGGTTGCCGAGTACCGGCGTCCCGTTCACTTCCGGCCTCTGA 1527 53.31 MAAIKSVLVLVLVLGSVIFAYSDDEVKNWCSQTPYPAPCEHFLTAKKTATEKNRPIASKSHFLKVLVESAIERAVLAQKNAVALGPKCQNDREKSAWTDCIELYDQIIHRLNRTAGRCSPVDVQTWLSAALTALDTCQAGFEELGVSAFGYSLTANNVSKLISDGLSVNKPASAEGFEPPSMNEGFPTWVKPGERKLLQSSAPNANVVVAKDGSGRFRTVSEAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLIGDGIGKTIITGSRSVGGGSTTFKSATVAVDGDGFIARDITIRNTAGASNHQAVALRSGSDLSVYYRCSFEGFQDTLYVFSERQFYRQCDIYGTVDFIFGNAAVVIQDSNIIARDPPNKTITITAQGRSDPNQNTGISIHNCRITSAGGLSGVKAFLGRPWREYSRTVVMTSSIGGFISPAGWMEWSGNFALNTLYYGEYKNTGAGASTANRVKWKGYRVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8999851 9002395 + CmoCh06G011760.1 Cmo06g01176 384738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01176 508 Pfam Pectinesterase 206 493 IPR000070 GO:0030599|GO:0042545
Cmo06g01176 508 SUPERFAMILY Pectin lyase-like 200 507 IPR011050 -
Cmo06g01176 508 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 169 IPR035513 -
Cmo06g01176 508 Pfam Plant invertase/pectin methylesterase inhibitor 25 164 IPR006501 GO:0004857
Cmo06g01176 508 PANTHER PECTINESTERASE 4 507 - -
Cmo06g01176 508 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
Cmo06g01176 508 Gene3D Invertase/pectin methylesterase inhibitor family protein 20 170 IPR035513 -
Cmo06g01176 508 CDD PMEI-like_3 29 174 - -
Cmo06g01176 508 PANTHER PECTINESTERASE 4 507 - -
Cmo06g01176 508 SMART PMEI_2 21 168 IPR006501 GO:0004857
Cmo06g01176 508 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 160 IPR006501 GO:0004857
Cmo06g01176 508 Gene3D - 200 508 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00998 Cmo-Chr2:6110312 Cmo06g01176 Cmo-Chr6:8999851 0 dispersed
Cmo06g01176 Cmo-Chr6:8999851 Cmo14g02028 Cmo-Chr14:14842482 0 dispersed
Cmo06g01175 Cmo-Chr6:8988503 Cmo06g01176 Cmo-Chr6:8999851 1.04E-123 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01176 K01051 - csv:101217552 838.18