Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01245 ATGGGGAAAGCCGATAACATCCTCCAAACTCTCGGGGACTTCACCAGCAAAGAGAATTGGGACAGTTTCTTCACCATCCGCGGCCATGGGGATGCTTTCGAGTGGTATGCCGAGTGGCCTCAGCTCAAAGATCCACTCATTTCTCACCTTCCTTCCCTCTCCCAAACAGCATCTCCTCAGATTCTCGTTCCTGGCTGCGGAAACTCCAGTCTATCTGAACAGCTTTACGACGCCGGCTTTCGATGTATCACCAATATTGATTTCTCTAAAGTTGCAATCTCCGATATGCTGCGCCGGAACGTGAGAGAACGCCCCGATATGCGGTGGCGCGTCATGGATATGACGAGCATGCAGTTCACGAACGATACATTTGATGCTGTTGTTGATAAAGGTGGATTGGATGCTTTAATGGAGCCAGAAGTTGGTTCCAAGCTGGGAAGTCAGTACTTATCTGAGGTGAAAAGAGTTCTAAAACCAGGAGGAAAGTTTATTTGTCTTACATTAGCAGAATCTCATGTTTTAGGCTTGCTCTTTCCCAAGTTTCGTTTTGGATGGAAGATGAGTATTCATGTCATACCTCAGAAACCACCGAGTAAGCCTAATTTTCAAACCTTTATGGTGGTGGTGGAGAAAGATGAATCTACTGCATTGCACCAGATAGAATCTTCTTTAAATTTTTCTTTGCTGGATTCCCATGGAAATCAGACTCGTGAACTTGTCAAAAGTCTTGAGAACGAGAATATAATTCGCCAAAAGTGTTCCAGTGGTGCTGATTTGCTGTTATCTCTTGAAGACCTGCAACTAGGAGCAAAGGGGGATCTGCAGAAGCTTCACCAAGGCCGTCGGATTCAATTTACTTTAGGTGGACAAGGGACCTCCGTTTTCAGTTATAGAGCTGTACTTCTTGATGCTCGGGAACAGTCTGGCTCATTCTTGTATGAATGCGGAGTTTTTATAGTGCCTAAGACCCGAGCTCATGAATGGCTGTTCTCTTCAGAAGAGGGCCAGTGGATGGTCGTTGAGAGTTCAAAAGCAGCTCGCCTTATAATGATTCTATTAGATGAGACACAATCTGGAGCTAACATGGATGCTATTCAGAAAGATTTATCTCCCCTAGTTAAACAATTGGCACCTGGTGAAAATGACAGTGGATCTCAAATTCCATTTATGACGGCAAGTGATGGGATCAAGGAACGTAATTGTGTTTTCCAGGGTACGTCTTCATTAACGGGATCAATAGTTGTTGAAGACGTGATATATGAACATGTAAGTAATGATGCCAGTCGCATCTTCCCAACGGGAGACTTGATATTTCGTCGCCTTATTTTCCAAAGAACAGAGAGTTTGGTGCAGTCGGAGGCTTTGTTGACAAGGGAAAGACTTCATGAGACAGTTTCTGGTCAGATAGACAGGAAAAGGTCTCATTCATCATCCAAATCAAAGAATAAAGGAAAGAAGAGACTGAATAAGGAGTCCAGCGACCAAATGAAGGTTTATCATTGCTATCTGGCAAGTTCTTATCATTTGGGGATCATTTCGGGGTTTATGTTGATATCTCAATATTTGGAGAGTGTAGCATCAGCTGGAACAACGGTGAATACAGCTGTCATTGGTCTTGGAGCAGGTTTGCTGCCCATGTTCCTCCGTGCATGCATGTGTTTTTTACACATTGAGGTGGTTGAGTTGGATTCAACAATTCTCAAACTTGCAAGGGATTACTTCGATTTTACTGAGGATGCAGATTTGACGGTTCATATTGCTGATGGGATTCAGTTTGTTAGAGAATTCAGAAATTCTGGGGCAAAGGATTCATCAGCAATTGTTCTCGACAATGGAAACTCATCTCGTGTAAAACATCGAGGAGATACGAAGATTGACATACTTATTATCGACGTGGATGCAACAGACTCAAGCTCTGGAATGACCTGCCCAGCAGCTGATTTTGTAGAAGAACCGTTTCTTCTAGCAGTGAAAGACGCCCTCTCCGAGCAGGGTATTTTTATTGTAAACTTGGTCACACGATCTCCGACCATTAACGATATGGTTGTCTCAAGAATGAAAGGAGTCTTTAATCACCTCTTTTCCCTTCAACTCGAGGAAGAAGTGAATGAAGTGCTTTTTGCTCTTCCTTCAGAGTTCTGTATAAAGGAGGCTCTCTTCAATGAATCAGCTCTTCAGCTTGAGAAACTTTTAAATCTGAAACACCCAGAAATCAGGCAAAGCATAGTTGATGCTACAAAGAAGATCAGATGTCTGAAGTAA 2262 43.15 MGKADNILQTLGDFTSKENWDSFFTIRGHGDAFEWYAEWPQLKDPLISHLPSLSQTASPQILVPGCGNSSLSEQLYDAGFRCITNIDFSKVAISDMLRRNVRERPDMRWRVMDMTSMQFTNDTFDAVVDKGGLDALMEPEVGSKLGSQYLSEVKRVLKPGGKFICLTLAESHVLGLLFPKFRFGWKMSIHVIPQKPPSKPNFQTFMVVVEKDESTALHQIESSLNFSLLDSHGNQTRELVKSLENENIIRQKCSSGADLLLSLEDLQLGAKGDLQKLHQGRRIQFTLGGQGTSVFSYRAVLLDAREQSGSFLYECGVFIVPKTRAHEWLFSSEEGQWMVVESSKAARLIMILLDETQSGANMDAIQKDLSPLVKQLAPGENDSGSQIPFMTASDGIKERNCVFQGTSSLTGSIVVEDVIYEHVSNDASRIFPTGDLIFRRLIFQRTESLVQSEALLTRERLHETVSGQIDRKRSHSSSKSKNKGKKRLNKESSDQMKVYHCYLASSYHLGIISGFMLISQYLESVASAGTTVNTAVIGLGAGLLPMFLRACMCFLHIEVVELDSTILKLARDYFDFTEDADLTVHIADGIQFVREFRNSGAKDSSAIVLDNGNSSRVKHRGDTKIDILIIDVDATDSSSGMTCPAADFVEEPFLLAVKDALSEQGIFIVNLVTRSPTINDMVVSRMKGVFNHLFSLQLEEEVNEVLFALPSEFCIKEALFNESALQLEKLLNLKHPEIRQSIVDATKKIRCLK 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9407983 9418677 - CmoCh06G012450.1 Cmo06g01245 384807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01245 753 Gene3D Vaccinia Virus protein VP39 482 739 IPR029063 -
Cmo06g01245 753 Pfam Spermine/spermidine synthase domain 553 700 - -
Cmo06g01245 753 PANTHER EEF1A LYSINE AND N-TERMINAL METHYLTRANSFERASE 12 721 - -
Cmo06g01245 753 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 12 721 - -
Cmo06g01245 753 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 535 716 IPR029063 -
Cmo06g01245 753 MobiDBLite consensus disorder prediction 466 492 - -
Cmo06g01245 753 Gene3D Vaccinia Virus protein VP39 12 227 IPR029063 -
Cmo06g01245 753 CDD AdoMet_MTases 61 165 - -
Cmo06g01245 753 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 16 169 IPR029063 -
Cmo06g01245 753 Pfam Methyltransferase domain 63 165 IPR013216 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01245 K25166 EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase [EC:2.1.1.-] - csv:101211869 1286.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00854 Cmo-Chr6:4791214 Cmo06g01245 Cmo-Chr6:9407983 1.55E-24 dispersed
Cmo06g01245 Cmo-Chr6:9407983 Cmo19g00656 Cmo-Chr19:7068906 1.18E-17 dispersed
Cmo06g01245 Cmo-Chr6:9407983 Cmo17g00950 Cmo-Chr17:8414417 3.70E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g949 . Blo12g00108 . . . . Bma04g01167 . . . . . Car06g01061 . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00374 . . . . . . . . . Cmo06g01245 . . . . . . . . . . . . . . . . . . . . . . . Chy06g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010449 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01245 Cmo_Chr06 FPKM 3.913386 8.537305 5.847094 5.524739 5.040146 5.503394 5.664327 1.009034 1.854317 2.031506