Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01247 ATGGCGTTTGCGTCTCGTTCTGCGATCCGCAAAGCAACCAATTTCTCCGATTATCTTCTGCGATCTTTCTCCACTTCCACTAAATCCGCTCACCATAACAATCACCAGCAAACGCACAAATACTTGGAGGCGAACGCCTTCGTTGGCAGCTGGGAGGCGCCGAAAGATCCCAAGGAAGCGCAGGCCAGGCTCGCTCTGCTTCGTAGGGATTACGCCAAGAAGGTGAAGCAGGTGCGGAAGAATTACATTCAGGAGGTCGAGCTCTTGAGACTCGAAAAGCAGCGTAAGGACGAAGCCAAGAGAGAGGCGCTTAGAGTGGTCAATGAGGAACGTAAGAAGCTTAAAGCCGAAGCTGCGAAAGCCCGAGCCGAAGAGCGTAAGGTTGCCGACGAAGAGTTCCGACAGACTTTGATGAAAGAACGAGCCGAGAAGCTCGAGCATTGGAGAATGATGGAAAAGACGAGGGAAGAAAAGAAGAACGAAAAGAACGAGCTAATAAGACGCCAGAGTCCCATGTGGATTGATGAGAAGAAGTTGGAAGAGAAGCTCTTAGACGCCATTGTTAATACCACCCCTCTCTGA 582 50.52 MAFASRSAIRKATNFSDYLLRSFSTSTKSAHHNNHQQTHKYLEANAFVGSWEAPKDPKEAQARLALLRRDYAKKVKQVRKNYIQEVELLRLEKQRKDEAKREALRVVNEERKKLKAEAAKARAEERKVADEEFRQTLMKERAEKLEHWRMMEKTREEKKNEKNELIRRQSPMWIDEKKLEEKLLDAIVNTTPL 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9423235 9426593 - CmoCh06G012470.1 Cmo06g01247 384809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01247 193 Coils Coil 72 131 - -
Cmo06g01247 193 PANTHER EXPRESSED PROTEIN 10 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01247 - - - csv:101212114 265.774
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01247 Cmo14g01953 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01953 Cmo-Chr14:14434035 Cmo06g01247 Cmo-Chr6:9423235 1.24E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g993 . . . . . . . . . . . Cma14g01900 Car06g01062 Car14g01701 Sed12g0370 Cpe08g00403 Cpe03g01600 Bhi01g00220 Tan10g0508 Cmetu06g2263 . Hepe05g1767 . Lcy11g1781 . . . . . . . . . . . Lsi05g01849 . . Cme06g00376 . . . . . . . . . Cmo06g01247 Cmo14g01953 . . . . . . . . . . . . . Cla05g00342 Cam05g0373 Cec05g0377 Cco05g0378 Clacu05g0367 Cmu05g0352 Cre05g0416 . Csa03g01088 Chy06g00357 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009769 1 1 0 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 3 1 1 0 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01247 Cmo_Chr06 FPKM 20.946198 22.489697 16.470362 17.172531 21.767141 26.150528 20.299492 16.966639 15.819846 15.575047