Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01250 ATGGACGGAACCATGGGGAAGAAAGCTAAGAAGAAGAACGGCCGAACTCCTACGAAGGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAGCGAAGCAGCACAACGGTGGAGATTGCTGATGATGATGTTTCAGTTGTTAAGGAGAATAGCCTATGCGGGCATATTGATAAATGCTTTAATTTGAATGAGTTATCTTCTAAACTTGGGTCCTCTGAACCTATTAGCTGTGAAGATTGTCAAGAAAGTTCAGCTGATAGAAGGGGGAGTAAGGGGAAGGCTAGACATGGGAAGAAGAAGGGGGGAACTTCGGTGGATGGTAAAGCTGATTCCAAAGCAATTTGGATTTGTTTGCAGTGTGGACATTATGCCTGTGGAGGAATTGGACTTCCTACAAACTCTCAGAGTCATGCTGTTCGACATGTCAGGCAAACTCGTCACCCGGTGGTGATTCAGTTCGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAATACACTACTTCCAGTGGAGAAAACTGAGGAGAATGGTGAACAGAAAGATGGTTTGTCTAATGTGGTGAAATTAATTAGGGACCAGTCTATGGAAGCCTCACCTGTGGATGTTGTGAATACATGGCAAGCAAGTAGCGACGTTACAGCTGCAACAAAATCGGAAAGTTCCATATTAAGTGATTTGGACAGAAGAAATCATTATGTTGTAAAAGGGTTGATTAATCTAGGTAACACATGTTTTTTCAATTCGATTCTTCAAAATCTCTTGGCCATTGATCTGTTGAGAGATCATTTACTGAAGTTGGAAGAATGTGTTGGGCCTCTAACTATAGCTTTGAAGATTATCTTTACAGAAGCAAGAATGGAAGGCAGAATGAAAGGTTCAATAAATCCAAGATCAGTTTTTGGTTGTATCTCTACCAAAGCCCCTCAGTTCAAAGGATACGAGCAACATGATAGTCACGAATTGCTTCGCGTTCTACTTGATGGATTGTCTACTGAAGAGCTTGCTTCAAGGAAGACGAAGAAGTCGAAGGAAGAGATAATATCTAGAAATCCCACTCCTACTTTTGTCGATGAGATGTTTGGGGGGCAAATATCAAGTGCTGTATGTTGCAAAGAATGTGGCCACACATCGACAGTTTACGAACCATTTCTAGATCTCTCTCTTCCTGTTCCAATGAAAAAATCTCTGGCCAAAAAGGTCCAACCAGTCTCTCGGACCAAGAAGTCGAAAGGGCCACCCAAGAGAAGTGGCAAGACGCATCCTAAAACTTACAAGGGTTCAGATGTTGTACCAGTTCAAATTGCCTCAGTTCCATCATCTGGTAATGAGTCCTCCCTTCAATCAGAGGCCAGCGCCAGTGGCACAACTATTATCATGGAGAAGACTTCAAGTTCTCAGAACGTTTCAGATGTTAAAGAGTCTGAAAAAGAAGTTGAGACCGAGAATGGAGGAGAATGTACTTCAGATGCTTTGACGTGGATGGATTTCCTTGGACCAGAACCAAATGCTGAAACTTATGATATTTCCACTACTCAGGATTCTGACAAAAATGTTGAAGTATTCATTAGTGATGATTCACAACAAAGCATCTGCGGGCCAAGTATGCCCGTATCGTCTCTTCATAATGAGCCGAATCAACGACCAGATTTTTCTCCAGCGGATTCGTGGGATGATGAATCCCCTTTACAGGTTCAAGCTTCTGATGTTTTGCTGCTTCCTTACCAGGAAGAGAGTTCCACTGCTGAAGTAGCAAAAGAAGATGATCAGGCTTCCTCATCAGTTTTGGGCTGTGCTCAAAATGATTTTGATGGATTTGGTCTTGGTGATATGTTTGATGAGCCTGAAGTCATTATGGGCCCCATTGCGAGGCCATCCACTGGGAATGAAGTTTTGGAAAGTAGTTTTATTAGTGAGTCTGAACCTGAGGAAGTTGATAATACTGATTCTCCCGTCTCTGTGGAGAGTTGTCTAACTTATTTCACGAAGCCAGAACTTCTGTCCAATGAAAATGGATATAACTGTGAAAAATGCTCAAAAAGAGTACAACAACAAAGGTTGGAAATGAAGAAGCAATCAAAAGTTGCTAGCAGTGCTGTTGAAAATGGATATGAAACAGCAGTAAGGGGTGATATATCATGCTTAGACAAGAACACTTCAGTTGAAGTAAAAAATCAAAGAAATATGAATTTAGTAAACGGGTCAGTAAGTTATAACAGTGGCGAAAGCTCGAATTTGAAAGAGAATGTAGATTGTTCCAGTCAAGATTGCACAAAGCCTGTCAATTGCAAGACAGATTCCCTTGTTTTGGATGCAGATGAAGCTATGGTTGATGGAGATATGAATCCTGGGCTAGCACATTCTTCAGGTTGTAATAACACCAGCAGTCAAGAATGTTCCGGTGATAAACCCAGTTGTTCTCTTTCCAACGACGATCCCAAGGGCGGTGGATGTCCACAATCTAATACCAAGCCCTTTAGTTCACAAATTTGTGCTGAGAACAGTGAATCAGAAAAGGGTGAGGAGGGTGAGATGGATTCTGATTCAACAATTGTGAATGTGAAAAGAGATGCAACAAAGAGGTTTCTCATTCACAAGGCCCCTCCGATCTTGACAATTCATATAAAGAGGTTTTGTCCTGATGCTCGAGGTCGTTATAGTAAATTGAATGGCCATGTTAGATTCAAGGAAACAATTGATCTCAAACCATACATGGATACCAGGTGTACAGATAGGGAGAAGTATAATTATCGGTTGGTCGGGGTCGTGGAGCACTCTGGATCTATGAGAGGAGGCCATTATGTTGCATATGTGAGAGGGGGGAACAGGAGGAGAAGCAGCAGTGGGGAAGCTGAGGAAGGCGCTTCTGTTTGGTATTATGCAAACGATGCCAGCGTAAACGAGGTTACCCTGGATCGGGTTCTCGGTTGTGATGCATACATCTTGTTTTATGAGATAACCTGA 2967 42.53 MDGTMGKKAKKKNGRTPTKEKRVSSSSPRKVPQRSSTTVEIADDDVSVVKENSLCGHIDKCFNLNELSSKLGSSEPISCEDCQESSADRRGSKGKARHGKKKGGTSVDGKADSKAIWICLQCGHYACGGIGLPTNSQSHAVRHVRQTRHPVVIQFENPQLRWCFSCNTLLPVEKTEENGEQKDGLSNVVKLIRDQSMEASPVDVVNTWQASSDVTAATKSESSILSDLDRRNHYVVKGLINLGNTCFFNSILQNLLAIDLLRDHLLKLEECVGPLTIALKIIFTEARMEGRMKGSINPRSVFGCISTKAPQFKGYEQHDSHELLRVLLDGLSTEELASRKTKKSKEEIISRNPTPTFVDEMFGGQISSAVCCKECGHTSTVYEPFLDLSLPVPMKKSLAKKVQPVSRTKKSKGPPKRSGKTHPKTYKGSDVVPVQIASVPSSGNESSLQSEASASGTTIIMEKTSSSQNVSDVKESEKEVETENGGECTSDALTWMDFLGPEPNAETYDISTTQDSDKNVEVFISDDSQQSICGPSMPVSSLHNEPNQRPDFSPADSWDDESPLQVQASDVLLLPYQEESSTAEVAKEDDQASSSVLGCAQNDFDGFGLGDMFDEPEVIMGPIARPSTGNEVLESSFISESEPEEVDNTDSPVSVESCLTYFTKPELLSNENGYNCEKCSKRVQQQRLEMKKQSKVASSAVENGYETAVRGDISCLDKNTSVEVKNQRNMNLVNGSVSYNSGESSNLKENVDCSSQDCTKPVNCKTDSLVLDADEAMVDGDMNPGLAHSSGCNNTSSQECSGDKPSCSLSNDDPKGGGCPQSNTKPFSSQICAENSESEKGEEGEMDSDSTIVNVKRDATKRFLIHKAPPILTIHIKRFCPDARGRYSKLNGHVRFKETIDLKPYMDTRCTDREKYNYRLVGVVEHSGSMRGGHYVAYVRGGNRRRSSSGEAEEGASVWYYANDASVNEVTLDRVLGCDAYILFYEIT 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9451992 9457353 - CmoCh06G012500.1 Cmo06g01250 384812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01250 988 ProSiteProfiles Zinc finger UBP-type profile. 53 190 IPR001607 GO:0008270
Cmo06g01250 988 MobiDBLite consensus disorder prediction 73 109 - -
Cmo06g01250 988 SMART Zf_UBP_1 107 160 IPR001607 GO:0008270
Cmo06g01250 988 Pfam Zn-finger in ubiquitin-hydrolases and other protein 79 169 IPR001607 GO:0008270
Cmo06g01250 988 MobiDBLite consensus disorder prediction 1 43 - -
Cmo06g01250 988 SUPERFAMILY Cysteine proteinases 229 986 IPR038765 -
Cmo06g01250 988 Gene3D Cysteine proteinases 622 700 - -
Cmo06g01250 988 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 237 988 IPR028889 -
Cmo06g01250 988 MobiDBLite consensus disorder prediction 529 551 - -
Cmo06g01250 988 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 986 - -
Cmo06g01250 988 MobiDBLite consensus disorder prediction 402 422 - -
Cmo06g01250 988 Pfam Ubiquitin carboxyl-terminal hydrolase 238 985 IPR001394 GO:0004843|GO:0016579
Cmo06g01250 988 MobiDBLite consensus disorder prediction 462 490 - -
Cmo06g01250 988 MobiDBLite consensus disorder prediction 815 835 - -
Cmo06g01250 988 MobiDBLite consensus disorder prediction 397 432 - -
Cmo06g01250 988 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 238 253 IPR018200 GO:0004843|GO:0006511
Cmo06g01250 988 MobiDBLite consensus disorder prediction 529 562 - -
Cmo06g01250 988 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 918 935 IPR018200 GO:0004843|GO:0006511
Cmo06g01250 988 MobiDBLite consensus disorder prediction 28 42 - -
Cmo06g01250 988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 193 IPR013083 -
Cmo06g01250 988 Gene3D Cysteine proteinases 786 988 - -
Cmo06g01250 988 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 7 986 - -
Cmo06g01250 988 Gene3D Cysteine proteinases 217 426 - -
Cmo06g01250 988 MobiDBLite consensus disorder prediction 803 849 - -
Cmo06g01250 988 SUPERFAMILY RING/U-box 54 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01250 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1546.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01250 Cmo14g01949 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01250 Cmo-Chr6:9451992 Cmo09g01133 Cmo-Chr9:6528289 5.00E-07 dispersed
Cmo14g01949 Cmo-Chr14:14407766 Cmo06g01250 Cmo-Chr6:9451992 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01250 Cmo_Chr06 FPKM 25.116344 23.136242 65.598572 60.918785 27.046263 28.960081 29.085119 65.13797 62.471138 71.954758
Cmo06g01250 Cmo_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 9.426353 0.0 0.0