Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01251 ATGGCTTGTGAAGCTATACAACAGTGGACATTTAATGGATTAGTGGCTGCATTTCTTGATCTCGGTATAGCTTATCTTGTATTATGTGCATCAAGTCTTGTTTTCTTTACTTCCAAATTTCTTGCACTGTTTGGATTATGTCTGCCTTGTCCTTGTGATGGCCTATTTGGTAATCTTAGTAGCGATCACTGCTTCCCAAAGATACTAGTGGATCGTTCATCCAAAAAAGTATCTTCTGTCATTCATTCGGCTAGAGAAAAGTTACCATTGAATTCCATGAGGGATCAAGAGCCAAAATGTTGTTTTAAGTCAACGTTGATGCATGAGAGGAATGGCAACGAGGCACACGTTGAATCGGAAGGTGAACCATCTGGTGATTCCTTTTTTAAAACCAGATCACCGCAAGCTATGATTTATGGAGATTTTCACAGTGTAAAAGAATCGCGTTGTAACGGCGATGTGGATCACAAGAAGGTCACGTCAGTGTCTCCAAATGACATTTCACAGTTGGATATGGAAGATCTTTCTCTGTCTCCTTCAAGCTTCAGTGGATTTGGGGATAATAATACTGAGGACGGCTTCTTTTCTGTCGATTCTGGAGATGAAAGAGAGGAGTCTTCCTCAGACAGCAGCGATCGATGTAAAGTATTTCCTGATGAGAAAATATGGGCGGAGAAGTTCGTAGCGTCTTTTGAAGAGGCAGGGAACAACTGCAGAGGGGAGTTATGCTTGGATGGTAATGAGAGTGATACAATCAAACTATTGGAACAAGCACTTGAAGAAGAGCAGATGGCTCGTGCAACTCTGTACCTGGAGCTTGAGAAAGAGAGAAGTGCTGCTGCCACTGCTACTGATGAGGCCATGGCTATGATATTACGTCTTCAGGAGGAGAAGGCGTCGATAGAAATGGATGCTAGGCAATACCAGAGGATGATAGAGGAGAAAACTGCTTATGATGCTGAGGAAATGAGTATTCTTAAAGAAATTCTAGTGAGGAGAGAGCGGGAAATGCATTTCCTCGAGAAGGAAGTTGAAGCGTTTCAGAAAAGTTTCTTTGAAGATGATGGAGTGGATGTTGATATGCTCGACCCGGAAATTACACCACAAGGGGTCCCTTCTTTCGCCTATTCGAGTAAAGGTCCATCTCATATGCTTCAATGCATTCATAGATCCATTAGAGACAAGCAAGATGCAAATTACACAAAACGTTCTTCACAATATGAGATCCCATCAATTGAGTCGCGGAAGTTAACTTTTGAATTTGAGGACGAGTCGCCATTTATTCACTCGGATGAACATGCTGATGCTGCAGAAGCCGGGGGCATGTTGTTGCACCAAGCTGCTGATAACTTCATGATTAAAGAAGAGAATGACAATGAGTTACAAGAAAGGGGCATGGTGGAAGATGAAAATTTATACATTCTACAAGGAGAAGTAAATGAACTGGAGCCATATCTGCAAAGCAATATGTCAAATGGTCTTGATAAAGTTGAGAAATCCACGGAACTGGAACCGATTGCAGATGAACGAGAAAAAGTTGACGAAGTTTCATATGACGGGTTGGCATCAGCTAAAACAATTACTCCCTGTGTTGAGTACAACTTGGAAAAGAATGGTGACCATCAAAAGCAGCAGCCAAAAGATCTCGACTTGATGACCAATGTTGATCCCCAATCTCATGATATTCATGTCATTGATGAAGAAGCTAGCACATGCGACAAAGTTAGTGCCGATGCAAGCAAAGAACCGGTGATCAATGGTACCTCGAGTTTTCCAGCAAACTGTTATAGCCCATCCTTCAGCTTGTTGCAGAGTGAACTAGACATCACAAGAAGCAACTCAGATGCCTCCGGTAGATTTCCACCATTTGCTCGTTCTCGAAGCAATTGCTTACGTTCTGATTTGCGTAGAAATTCAATGTCTGCTGTCGATTATGAAAGGTCCAAAATTGGCGATGAAGTTGAGTCGCTCAGAGAAAGGCTGAAGATTGTTCAGGAGGAAAGAGAAAAACTCAGGTTCTCTTTGGAACACAAAGACAAGGAGAACAATCAGTTACAACTCTTAGAAAGTATAACAAATCACCTTCGTGAAATCCGGCACCTGACGGATCCTGGAAAGGCAATTCTGCAGGCTCCATTTCCTCCATCCTCTAAGGGTGTGTCAAAGAAACGATGCTGGCGAAGTTCATCTTTAAGCATTCACAGAAGCAGCTAA 2214 42.37 MACEAIQQWTFNGLVAAFLDLGIAYLVLCASSLVFFTSKFLALFGLCLPCPCDGLFGNLSSDHCFPKILVDRSSKKVSSVIHSAREKLPLNSMRDQEPKCCFKSTLMHERNGNEAHVESEGEPSGDSFFKTRSPQAMIYGDFHSVKESRCNGDVDHKKVTSVSPNDISQLDMEDLSLSPSSFSGFGDNNTEDGFFSVDSGDEREESSSDSSDRCKVFPDEKIWAEKFVASFEEAGNNCRGELCLDGNESDTIKLLEQALEEEQMARATLYLELEKERSAAATATDEAMAMILRLQEEKASIEMDARQYQRMIEEKTAYDAEEMSILKEILVRREREMHFLEKEVEAFQKSFFEDDGVDVDMLDPEITPQGVPSFAYSSKGPSHMLQCIHRSIRDKQDANYTKRSSQYEIPSIESRKLTFEFEDESPFIHSDEHADAAEAGGMLLHQAADNFMIKEENDNELQERGMVEDENLYILQGEVNELEPYLQSNMSNGLDKVEKSTELEPIADEREKVDEVSYDGLASAKTITPCVEYNLEKNGDHQKQQPKDLDLMTNVDPQSHDIHVIDEEASTCDKVSADASKEPVINGTSSFPANCYSPSFSLLQSELDITRSNSDASGRFPPFARSRSNCLRSDLRRNSMSAVDYERSKIGDEVESLRERLKIVQEEREKLRFSLEHKDKENNQLQLLESITNHLREIRHLTDPGKAILQAPFPPSSKGVSKKRCWRSSSLSIHRSS 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9458147 9462679 - CmoCh06G012510.1 Cmo06g01251 384813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01251 737 MobiDBLite consensus disorder prediction 709 737 - -
Cmo06g01251 737 MobiDBLite consensus disorder prediction 196 214 - -
Cmo06g01251 737 MobiDBLite consensus disorder prediction 193 214 - -
Cmo06g01251 737 ProSiteProfiles GTD-binding domain profile. 250 348 IPR007656 -
Cmo06g01251 737 Coils Coil 647 674 - -
Cmo06g01251 737 Coils Coil 291 311 - -
Cmo06g01251 737 PANTHER BNAANNG28530D PROTEIN 3 723 - -
Cmo06g01251 737 Coils Coil 330 350 - -
Cmo06g01251 737 Pfam Zein-binding 255 344 IPR007656 -
Cmo06g01251 737 PANTHER BNAANNG28530D PROTEIN 3 723 - -
Cmo06g01251 737 MobiDBLite consensus disorder prediction 722 737 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01251 - - - mcha:111016085 985.326
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01251 Cmo14g01948 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01251 Cmo-Chr6:9458147 Cmo14g00386 Cmo-Chr14:1787585 2.47E-18 dispersed
Cmo08g00215 Cmo-Chr8:1285915 Cmo06g01251 Cmo-Chr6:9458147 1.82E-58 transposed
Cmo14g01948 Cmo-Chr14:14402780 Cmo06g01251 Cmo-Chr6:9458147 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g900 . . . . . . . . . . . Cma14g01896 . Car14g01698 Sed02g1501 Cpe08g00399 Cpe03g01595 Bhi01g00229 Tan10g0517 Cmetu06g0717 . Hepe05g1763 . Lcy11g1777 . . . . . . . . . . . Lsi05g01844 . . Cme06g00379 . . . . . . . Bma06g01282 . Cmo06g01251 Cmo14g01948 . . . . . . . . . . . . . . . . . . . . . Csa03g01093 Chy06g00362 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006891 1 2 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 1 1 1 1 0 8 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01251 Cmo_Chr06 FPKM 19.680752 20.075901 61.517677 59.646076 25.508335 24.721411 21.116598 57.195183 64.525467 72.80349