Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01253 ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCGGCCATTTCGGCGCTGCCGATTGACGCCGGCGGTCACGGCAAGTTTCAGGGTTCTCTTGACGGAACGAATCTTCCCGGCGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCGAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACGCTTTATCACTTAAAATCGCACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACCGAGAATTCAAAGGACGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCGTCGTTGTCGCCATCGTCGAGATTAATGACACAGGATCTTAACGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTACAGCGCCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAGTCGATACTCGACCGAGCTTGTCAAGCATTAAGCGATCAGACTGCAGCCTCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCCGAACTTGCAATCAAAGTCTCGAATGACTCGAAAGATATGGCACCATTGGAGTCACAAAAAGTGCTTCCCTTCTCGGAACTCGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACTGTTATGGCTCGAATAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCTCCTATCGGAGTAGGGTCGACTGTCACCGCAATGAAGAGACCGAGACCAGCTTTCAGTCATGGAGATTCAATGGTGCTCGAGGGCAATGCTCGGCACGAGGTCGAATGGATGATGAGTAATATTGGATGA 951 51.74 MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSLSPSSRLMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKDMAPLESQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMVLEGNARHEVEWMMSNIG 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9468323 9472100 - CmoCh06G012530.1 Cmo06g01253 384815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01253 316 Gene3D - 50 109 - -
Cmo06g01253 316 Coils Coil 206 226 - -
Cmo06g01253 316 MobiDBLite consensus disorder prediction 115 140 - -
Cmo06g01253 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 313 IPR044848 GO:0003700
Cmo06g01253 316 MobiDBLite consensus disorder prediction 114 140 - -
Cmo06g01253 316 SUPERFAMILY Homeodomain-like 51 108 IPR009057 -
Cmo06g01253 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 108 IPR017930 -
Cmo06g01253 316 PANTHER PROTEIN PHR1-LIKE 2 12 313 - -
Cmo06g01253 316 Pfam MYB-CC type transfactor, LHEQLE motif 149 194 IPR025756 -
Cmo06g01253 316 Pfam Myb-like DNA-binding domain 54 104 IPR001005 -
Cmo06g01253 316 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 51 106 IPR006447 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01253 Cmo14g01946 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01694 Cmo-Chr2:9712038 Cmo06g01253 Cmo-Chr6:9468323 5.12E-54 dispersed
Cmo03g00638 Cmo-Chr3:5845977 Cmo06g01253 Cmo-Chr6:9468323 2.14E-66 dispersed
Cmo06g01253 Cmo-Chr6:9468323 Cmo19g01150 Cmo-Chr19:9659420 3.00E-69 dispersed
Cmo19g00220 Cmo-Chr19:1459343 Cmo06g01253 Cmo-Chr6:9468323 1.04E-51 dispersed
Cmo01g00513 Cmo-Chr1:2468014 Cmo06g01253 Cmo-Chr6:9468323 5.77E-50 transposed
Cmo06g01724 Cmo-Chr6:11843093 Cmo06g01253 Cmo-Chr6:9468323 3.90E-62 transposed
Cmo14g01154 Cmo-Chr14:9041919 Cmo06g01253 Cmo-Chr6:9468323 8.59E-64 transposed
Cmo14g01946 Cmo-Chr14:14393688 Cmo06g01253 Cmo-Chr6:9468323 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10009 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01253 - - cmax:111473855 593.964