Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01253 | ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCGGCCATTTCGGCGCTGCCGATTGACGCCGGCGGTCACGGCAAGTTTCAGGGTTCTCTTGACGGAACGAATCTTCCCGGCGATGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTTCATGAGCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCGAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACGCTTTATCACTTAAAATCGCACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACCGAGAATTCAAAGGACGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCGTCGTTGTCGCCATCGTCGAGATTAATGACACAGGATCTTAACGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAGATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTCGAGGTACAGCGCCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTACAGTCGATACTCGACCGAGCTTGTCAAGCATTAAGCGATCAGACTGCAGCCTCTGCAGGACTCGAAGCTGCCAGAGAAGAGCTCTCCGAACTTGCAATCAAAGTCTCGAATGACTCGAAAGATATGGCACCATTGGAGTCACAAAAAGTGCTTCCCTTCTCGGAACTCGCTGCTGCTCTAGAAAACCGAAAAGCTCCTACTGTTATGGCTCGAATAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGAAGCCCGGTTTCTCCTATCGGAGTAGGGTCGACTGTCACCGCAATGAAGAGACCGAGACCAGCTTTCAGTCATGGAGATTCAATGGTGCTCGAGGGCAATGCTCGGCACGAGGTCGAATGGATGATGAGTAATATTGGATGA | 951 | 51.74 | MLSGFSQEPAGMYSAISALPIDAGGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSLSPSSRLMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILDRACQALSDQTAASAGLEAAREELSELAIKVSNDSKDMAPLESQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIGVGSTVTAMKRPRPAFSHGDSMVLEGNARHEVEWMMSNIG | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9468323 | 9472100 | - | CmoCh06G012530.1 | Cmo06g01253 | 384815 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01253 | 316 | Gene3D | - | 50 | 109 | - | - | |
Cmo06g01253 | 316 | Coils | Coil | 206 | 226 | - | - | |
Cmo06g01253 | 316 | MobiDBLite | consensus disorder prediction | 115 | 140 | - | - | |
Cmo06g01253 | 316 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 12 | 313 | IPR044848 | GO:0003700 | |
Cmo06g01253 | 316 | MobiDBLite | consensus disorder prediction | 114 | 140 | - | - | |
Cmo06g01253 | 316 | SUPERFAMILY | Homeodomain-like | 51 | 108 | IPR009057 | - | |
Cmo06g01253 | 316 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 48 | 108 | IPR017930 | - | |
Cmo06g01253 | 316 | PANTHER | PROTEIN PHR1-LIKE 2 | 12 | 313 | - | - | |
Cmo06g01253 | 316 | Pfam | MYB-CC type transfactor, LHEQLE motif | 149 | 194 | IPR025756 | - | |
Cmo06g01253 | 316 | Pfam | Myb-like DNA-binding domain | 54 | 104 | IPR001005 | - | |
Cmo06g01253 | 316 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 51 | 106 | IPR006447 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g01253 | Cmo14g01946 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01694 | Cmo-Chr2:9712038 | Cmo06g01253 | Cmo-Chr6:9468323 | 5.12E-54 | dispersed | |
Cmo03g00638 | Cmo-Chr3:5845977 | Cmo06g01253 | Cmo-Chr6:9468323 | 2.14E-66 | dispersed | |
Cmo06g01253 | Cmo-Chr6:9468323 | Cmo19g01150 | Cmo-Chr19:9659420 | 3.00E-69 | dispersed | |
Cmo19g00220 | Cmo-Chr19:1459343 | Cmo06g01253 | Cmo-Chr6:9468323 | 1.04E-51 | dispersed | |
Cmo01g00513 | Cmo-Chr1:2468014 | Cmo06g01253 | Cmo-Chr6:9468323 | 5.77E-50 | transposed | |
Cmo06g01724 | Cmo-Chr6:11843093 | Cmo06g01253 | Cmo-Chr6:9468323 | 3.90E-62 | transposed | |
Cmo14g01154 | Cmo-Chr14:9041919 | Cmo06g01253 | Cmo-Chr6:9468323 | 8.59E-64 | transposed | |
Cmo14g01946 | Cmo-Chr14:14393688 | Cmo06g01253 | Cmo-Chr6:9468323 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10009 | PF00249 | Myb_DNA-binding | 1.90E-07 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01253 | - | - | cmax:111473855 | 593.964 |