Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01271 ATGAAGAAATTCGCCGAGATCATGAAGGAGATGGAGACTGAATGGATCATGGATGTTCCTGATACACCTGATCGGTTAGCTGCCCGACAAATTAATGGCAGACAGTTTATTCAGACGGAGGGTGGTTCATCCTTATCTAATCGTTTGAGAAAGCCTGATTTCATGATGGAAAAGGGGATGAATGGCATGAAGGGTGCAGGGGTGCTTGTCAGTGAAAATGGGCATGATTTGAGATTAGACAGTAGTTCCAAAAATATTCCTGGTGATGATTTTAAGGATCGCAGTAACACCATTATTCTTTCAGCGGGAGAGAATTCTTATGCATCACAAAATCATATTTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATGTCAGGGGCCAAAACCTTTTAATTCCCCTCGTCGCATTGATAAAGGGATTACGATATCTGTCGACACTCCTTCCAAACCTCCTGCTCGTCAAGAAAATACTGTCATTCCAAAAATAAGAGAACCTGATCATAAGTACAGACCTCAGATGGTTTATCCTCATTTTACAGCTAAGGACTGTAAGATGGAGAACACATTGAATGGACAGTCCACACGTTATATGCCAAATGCTCCAAAGAGATCCAGCACGATCATTAAAGGGAAGGAAAAGGCTGTTGAGGAATCAAATAACACTCATAATCGACATGAGAAGCAAGTTTTGGATTCTCACCAGTTTGTTAACTCCCCTAGAGCCACTGGACATAAAAGGCTGGTCAGAAATGGTTGTATCTCACCTCATAATATATCATCAAAGACAAAACATTTATCTGAGCAGTGTGAAAAGAGTTCTAGAGGTGTAGACCAGAGCAATTTAGGGAGCATGCCATCAAGCAGTCCATCTTGTCTGATTGATATAAAGGATATAGTTGCGGAAGACAATCGTATTAACAAAGATAAAGGAAAAAGGATTATGCGTCAACCTTCTACATCACATGATGATGATGATATCAAAGTCATTTGTGCATCTAGCAGTGTCGCGGAAAAGGCCGTTGGAGCTAATCCAGTCGGAACTTCCAGATTAGATACATCTGAATGTTCTGAAGAATTAGGTGGTTGGAGAAGAACACATAATAATTCAAGGAAGGGGATTTTCTTGTCTAATCCATCTGGGAATTCTTTTAAGAAAATAAATAACATTGGAAAACTTTCTAATGGAGAAACTGAAATTGTTATGGAGAGAAAAACCCCTAACAAGAAAGACCAAGGAGCGGAAATTGGTTGTGCTAGAAATGCTGATACAGCTCAAAGGGCTTTTGGCATTGTACCCAAGATAGACCAGACCGTTGGACCAATGCATGCTGAAAGCAAACTCAACAAAAGACGGAAGAAACTTGGATCAACCTCACAAACTAATACTTCATTGCACGTTCCAGACGTTGTGTACCTCGATACACCTGGGGAGTCTTCAAATGCAAGGTCAAATAGACTCCAGAGTCAAAGAATTTGTGATAACTTGAATGATGTTATTGAGGTTGATGAGTTGTCACCTGAAATTAGACACCCTACCTCCCAGACTGTTGGTTGCCCAAATGATGACAGTGTAGATGCTAAGGCAAGACAACTTGAAGCTGACGAGATGTTGGCTCGTGACCTTCAGGAACAACTATATCAGGAGATGCCTGTTGGAGAAGAGATTGATGAACATTTAGCTATGGCACTGCAGCAGGTGGAGAATGGGCATTTTGCACCTCCTTCCCGGCGGACACACAATAGTCAAAGGGGCTCGATGGTAGCACAGGCAAATAGACGCACTCGATCTCAATCTGTACAAAGTTCTTCTAATAGAACACGGACTCGAGTAACCCACTCTGCACGAATGGCACAAATGAGAAATCAATTTTTTGGTGGCTCTCATAGAGTGTCAACTAGACAAAGGAATGTTAATTTTCCTATGCATATGGATTTGGATATGAGACTTGATATATTGGAAGCGCTCGAGGCCGCAGTTGGAGACGTGGAAGATGTGAGAATGAATAGGAGGGGCATTTTGCACATCCAGCGCGATTTTAACGAGAATGATTACGAAATGTTGCTATCCCTCGACGAGAACAACCACCGCCATGCTGGTGCATCGACGAACCGGATTAATAGTTTGCCTCAATCTACTGTTCAGGTGGGTGGTGGTTCTACATCCAGTTTTCAACCGACAGCATGGAAGAAGCTTGTGCAATTTGTCTTGATACACCGACCATTGGAGACGTCATTCGCCATCTACCTTGCTTACACAAATTTCATAAAGATTGTATCGATCCATGGCTACAGAGGCGAACGTCGTGCCCAGTTTGTAAGTTGTCAATCGCTTGATATTAAGGGCGACTTCGGGGTATTACAAGTCTGCACGCTCTCTTACTCTCTTTTGGAGCCAAGAACGCTTGATCTCGGGCAGTCGGAATCGTTAGACTTCAAAGGTGCAATTCTCCATTGGGGAACAGAGCAAAGTTTCCAGCTCGAACGAGTGGGTATGGTTTTGAATGAATCATCAACCAACCGGAGAAGATTCATAATTTGTATCTATGGCAGCCTATTTATAATTTATATGCTAACCCATTGCCATACAGCAAGAAAAGCTTAA 2604 42.13 MKKFAEIMKEMETEWIMDVPDTPDRLAARQINGRQFIQTEGGSSLSNRLRKPDFMMEKGMNGMKGAGVLVSENGHDLRLDSSSKNIPGDDFKDRSNTIILSAGENSYASQNHILLRKGGREKYSCQGPKPFNSPRRIDKGITISVDTPSKPPARQENTVIPKIREPDHKYRPQMVYPHFTAKDCKMENTLNGQSTRYMPNAPKRSSTIIKGKEKAVEESNNTHNRHEKQVLDSHQFVNSPRATGHKRLVRNGCISPHNISSKTKHLSEQCEKSSRGVDQSNLGSMPSSSPSCLIDIKDIVAEDNRINKDKGKRIMRQPSTSHDDDDIKVICASSSVAEKAVGANPVGTSRLDTSECSEELGGWRRTHNNSRKGIFLSNPSGNSFKKINNIGKLSNGETEIVMERKTPNKKDQGAEIGCARNADTAQRAFGIVPKIDQTVGPMHAESKLNKRRKKLGSTSQTNTSLHVPDVVYLDTPGESSNARSNRLQSQRICDNLNDVIEVDELSPEIRHPTSQTVGCPNDDSVDAKARQLEADEMLARDLQEQLYQEMPVGEEIDEHLAMALQQVENGHFAPPSRRTHNSQRGSMVAQANRRTRSQSVQSSSNRTRTRVTHSARMAQMRNQFFGGSHRVSTRQRNVNFPMHMDLDMRLDILEALEAAVGDVEDVRMNRRGILHIQRDFNENDYEMLLSLDENNHRHAGASTNRINSLPQSTVQVGGGSTSSFQPTAWKKLVQFVLIHRPLETSFAIYLAYTNFIKIVSIHGYRGERRAQFVSCQSLDIKGDFGVLQVCTLSYSLLEPRTLDLGQSESLDFKGAILHWGTEQSFQLERVGMVLNESSTNRRRFIICIYGSLFIIYMLTHCHTARKA 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9587341 9593301 + CmoCh06G012710.1 Cmo06g01271 384833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01271 867 MobiDBLite consensus disorder prediction 571 613 - -
Cmo06g01271 867 PANTHER - 290 715 - -
Cmo06g01271 867 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 290 715 - -
Cmo06g01271 867 MobiDBLite consensus disorder prediction 575 613 - -
Cmo06g01271 867 MobiDBLite consensus disorder prediction 273 289 - -
Cmo06g01271 867 MobiDBLite consensus disorder prediction 252 289 - -
Cmo06g01271 867 Coils Coil 209 229 - -
Cmo06g01271 867 Coils Coil 525 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01271 - - - csv:101205482 995.342
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01271 Cmo-Chr6:9587341 Cmo15g00350 Cmo-Chr15:1636510 2.96E-09 dispersed
Cmo14g01926 Cmo-Chr14:14284340 Cmo06g01271 Cmo-Chr6:9587341 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g854 . . . . . . . . . . Cma06g01262 . Car06g01085 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01271 . . . . . . . . . . . . . . . . . . . . . . . Chy06g00389 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008707 0 2 1 1 1 0 2 0 0 1 0 0 2 1 1 2 0 3 2 0 1 1 1 1 1 0 1 6 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01271 Cmo_Chr06 FPKM 4.248395 4.675478 20.402752 19.129219 55.914257 53.849979 60.296982 14.818122 16.936947 17.562042