Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01273 ATGGCTAGGAAAGTACATAACACTTTAAGCCAACAATTATACATGGAACGACCAAGAGTTGTTACGGATGTCCGAATTACTGCAGATCATGGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCCCAGTTTGTGAGGGATCGAGCTGCTTTAAGAAGGTTGTCGGATGTGAGTGATGGAGATCAACAACAGCAGCCGCAAAAGAGAACAGGTCTTGCTTTAAATCCGAGAAGCCAACTCGTATATGAGGATCTCAGTGGAATTCTTGGACTCAAGAGGATGAATTCTGAAAGCAGTTCAGAATTATCATCAATGCCCGCGAATGCTTATGCAGCTGAAAGGGATAACAAGGTTTATCCTAACAGCACAAGCAAATATCAGTGGGAATATAGTGCTACTGGACAAGCATCTGGTGCATATGCTGATGAAATTAACCGAGTTCAATTTGACCCCTCAACACTGGCCTTGTATGCAATGGAATCACCTCATTCATGTTATCCTTGTGGGGCTGGATTGGGAGATTTCCCTGTCACTGGCAAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATATTACCAAGGCCTAATGATGGGAAGCTTAGATATGTAGGTGGAGAAACACGCATTATATCCATTAGGAAAAACATCTCTTGTGAACAACTTATCAGAAAGACATACGCTGTCTGTAAGTATGTCCACACTATAAAGTACCAGCTTCCTGGTGAAGATCTCGATTCACTTATCTCTGTTTGTTCTGATGAGGATCTTCATCATATGATTGAGGAATATCATGAGCTGGAAAACGCAGGGAGTTCTCAAAGACTCAGAATAATTCTTGTTTCTACAAATGATTGTTGTGAGAGTCCTACTTCTATTGAAGGAAGGGTGGTTCAACCAATTGATGTTGATTATCAATATGTTGCGGCTGTAAATGGTATGCTAGACCCAAGTCTTCAAAGGAGCTCTAGTGGACAGAGTTTCACAAGTCAGACTAGCCAGGTGGGAACCATCTCAGATCCTAGTCCCAATTTTTGTACTGTTTCTTCACATGCTACAGACTTAAAAGATGCCAATTCACCTATACCAAATTTGGCAGGAATGTTTCCTAGACCTGGTGGTCAATTGTTAATACCCATTCAAACCCCACGCAAGTCATTTAATCAAACACCTTTATTTTCTCCGGTTGCAGTAAAGCAAAAAGATTTTAAGAACGTGGATCCAACATACGCAGAAGATGCTAGAAACTTCACTCCATTTGTTGCAGAAAAACGTCCATGTGATACGGTTTATTATGTCGATGCAATAGGCCGTCACAATAACCTTTACCATGGTTCTCCGCTGATGAATTATCATCATGACAAATCTACAGTGGAAACTGATGAGAAATACAAAGTTCATGATGTTCATTTCCCACAAAGCTCCAGCGAAGATTTTGTGCCTGCAACTTACTGGGATCAAAGTGATACACATTCAATCAAGACTCTGCTCAAGGAACGGGCAGTTAATTATGAACAGCTATACTCGGATGCCGAATATTTGATGCAGTTAAGATCTGGAACCACCCACATGAGACAAACAATGATGCATTCACATTCTGAGCCCCTACTAAAGGAACAGGATCAAAAGTTGAAACATGGAGGAGCCTATCCACTGAACTCATTCAATGATAGTGATCAATTATATTCAATGGCAATGTCAAGTTCCTTTCAGGATTTCCAAACGATATGGAAACAGAGAGTTGGCGGGGAATTTCAAGATGCCAAGTATGAGAAACATGGAAAGTTGGCGTCTGGTAGTGAGAATGAAGGATATGAAGAATGCAATTTTGATGAAAAAAAGGTTAATTTCAATGGACGTATTTATGTCCCATCACTTAATGGTGATGAAAAATACAAATACTTGCAACATGTTGACTACCAACAAAATGGTTACCCCCCGCTAGAGGTACAAAGCCTTGGAGGCAGAACTTCTGCAGAACGAGGGTTTGAATTAGAAAAATCTGCAGATGTCGTGGATGGCCCCTCCCTCATTTACCATTTAGAAACAACTGCTCCAAAAGTTTTCGAGGAGAGCCAATATTCTGTCGAGGATCAACGAACCACTTCTGATATAGTAAGGAGCCAACCATTTTCTTGCGCATCTGCTGATCTACTACCTCTTACAACTCAAGCTTTGTGCGACAGAAAGATCATAAATCAGGAACCAACATGGGATAGTTCTGCTTTAGGTAGAGATGTTTCTCTAGGCGATGAGAACTTCGTAACCTGTAATTACCGTAAGGTTGCAGACCATAGTAGAAAAAAGAGCAATCTTGATGATTCTCTGTTTATCAAATCATCAAATTCAGATGATTTTCATAGCAATGAGGACGTGGGATTAGCTGTAATAGTTGAAGATGTAACTCATAGTATACCTCCCGACATACCCTTAGCTTCTGGAGTTATCCCACGGGTTGAAAATGAGGCCAGTGATGACTCTCCATCTTCAAGAGGACATGATGCTCATATTCCTAGTACAGAAACTGACCATGAGGATGCAGACAGTATTCTTAATTCTAGGGATGAATCAATGAGCGAGGCAGCAATAGCTGAAATTGAAGCCGGCATCTATGGCCTGCAGGTTCCGAGCTTCTCTACTTTATCACAACATATGCGCCTTTCCATCATAAAGAATGAAGATCTTGAAGAACTGCAAGAATTAGGATCTGGGACGTTTGGCACAGTTTTTCATGGAAAATGGAGGGGAACGGATGTCGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGAAGTTTTTCTGAGCAAGAAAGACTGACTAGAGATTTCTGGAGAGAAGCAAGGATTCTATCGACTCTTCACCATCCGAACGTGTTGGCTTTTTATGGAGTGGTTCCTGATGGACCTGATGGAACGTTGGCAACTGTAACGGAGTATATGGTAAACGGGTCATTAAGGCATGTTCTTTTAAGAAAGGATAGAGTGCTTGATCGTCGGAAAAGGCTTATGATTGCAATGGATGCAGCTTTTGGCATGGAATATTTGCATTTGAAAAACATTGTTCATTTTGATCTGAAGTGTGATAATTTGTTGGTCAACTTGAGGGATCCTGAACGACCCATATGCAAGGTTGGAGATTTTGGGTTGTCGAGAATTAAGCGCAACACACTTGTTTCTGGAGGTGTGCGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGATAGTGGCAGTTCTAAGGTCTCTGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACTGGCGAGGAGCCATATGCCAACATGCATTGTGGTGCCATCATTGGTGGAATTGTAAGTAATACTCTTAGACCACCGATCCCTAAACGCTGCGATACCGAATGGAAAAAGCTAATGGAAGACTGTTGGTCACCAGAACCTGCAGCGAGGCCATCGTTCACCGAGATAACGAATAGACTTCGCAGCATGTCGGTAGCGCTCCAGATCAGAAAGAGGCCAAATGTAGGTAGTAGATGA 3537 41.65 MARKVHNTLSQQLYMERPRVVTDVRITADHGVSDVCVQTGEVFSPQFVRDRAALRRLSDVSDGDQQQQPQKRTGLALNPRSQLVYEDLSGILGLKRMNSESSSELSSMPANAYAAERDNKVYPNSTSKYQWEYSATGQASGAYADEINRVQFDPSTLALYAMESPHSCYPCGAGLGDFPVTGKMKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNISCEQLIRKTYAVCKYVHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYHELENAGSSQRLRIILVSTNDCCESPTSIEGRVVQPIDVDYQYVAAVNGMLDPSLQRSSSGQSFTSQTSQVGTISDPSPNFCTVSSHATDLKDANSPIPNLAGMFPRPGGQLLIPIQTPRKSFNQTPLFSPVAVKQKDFKNVDPTYAEDARNFTPFVAEKRPCDTVYYVDAIGRHNNLYHGSPLMNYHHDKSTVETDEKYKVHDVHFPQSSSEDFVPATYWDQSDTHSIKTLLKERAVNYEQLYSDAEYLMQLRSGTTHMRQTMMHSHSEPLLKEQDQKLKHGGAYPLNSFNDSDQLYSMAMSSSFQDFQTIWKQRVGGEFQDAKYEKHGKLASGSENEGYEECNFDEKKVNFNGRIYVPSLNGDEKYKYLQHVDYQQNGYPPLEVQSLGGRTSAERGFELEKSADVVDGPSLIYHLETTAPKVFEESQYSVEDQRTTSDIVRSQPFSCASADLLPLTTQALCDRKIINQEPTWDSSALGRDVSLGDENFVTCNYRKVADHSRKKSNLDDSLFIKSSNSDDFHSNEDVGLAVIVEDVTHSIPPDIPLASGVIPRVENEASDDSPSSRGHDAHIPSTETDHEDADSILNSRDESMSEAAIAEIEAGIYGLQVPSFSTLSQHMRLSIIKNEDLEELQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDRVLDRRKRLMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSGSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDTEWKKLMEDCWSPEPAARPSFTEITNRLRSMSVALQIRKRPNVGSR 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9595662 9601584 - CmoCh06G012730.1 Cmo06g01273 384835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01273 1178 SMART serkin_6 897 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01273 1178 CDD PB1_UP2 187 282 - -
Cmo06g01273 1178 CDD STKc_MAP3K-like 903 1160 - -
Cmo06g01273 1178 PRINTS Tyrosine kinase catalytic domain signature 1016 1034 IPR001245 GO:0004672|GO:0006468
Cmo06g01273 1178 PRINTS Tyrosine kinase catalytic domain signature 1131 1153 IPR001245 GO:0004672|GO:0006468
Cmo06g01273 1178 PRINTS Tyrosine kinase catalytic domain signature 979 992 IPR001245 GO:0004672|GO:0006468
Cmo06g01273 1178 PRINTS Tyrosine kinase catalytic domain signature 1087 1109 IPR001245 GO:0004672|GO:0006468
Cmo06g01273 1178 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 96 546 - -
Cmo06g01273 1178 SUPERFAMILY Protein kinase-like (PK-like) 880 1159 IPR011009 -
Cmo06g01273 1178 Pfam PB1 domain 199 284 IPR000270 GO:0005515
Cmo06g01273 1178 ProSiteProfiles Protein kinase domain profile. 897 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01273 1178 PANTHER SERINE-THREONINE PROTEIN KINASE 96 546 - -
Cmo06g01273 1178 PANTHER SERINE-THREONINE PROTEIN KINASE 756 1172 - -
Cmo06g01273 1178 MobiDBLite consensus disorder prediction 811 851 - -
Cmo06g01273 1178 Gene3D Transferase(Phosphotransferase) domain 1 985 1174 - -
Cmo06g01273 1178 MobiDBLite consensus disorder prediction 58 78 - -
Cmo06g01273 1178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1022 1034 IPR008271 GO:0004672|GO:0006468
Cmo06g01273 1178 Gene3D Phosphorylase Kinase; domain 1 891 984 - -
Cmo06g01273 1178 ProSitePatterns Protein kinases ATP-binding region signature. 903 928 IPR017441 GO:0005524
Cmo06g01273 1178 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 756 1172 - -
Cmo06g01273 1178 SMART PB1_new 198 285 IPR000270 GO:0005515
Cmo06g01273 1178 SUPERFAMILY CAD & PB1 domains 199 287 - -
Cmo06g01273 1178 Gene3D - 202 286 - -
Cmo06g01273 1178 MobiDBLite consensus disorder prediction 826 851 - -
Cmo06g01273 1178 MobiDBLite consensus disorder prediction 60 77 - -
Cmo06g01273 1178 Pfam Protein tyrosine and serine/threonine kinase 899 1160 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01273 - - - cmax:111473634 2264.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01273 Cmo14g01923 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01273 Cmo-Chr6:9595662 Cmo18g00250 Cmo-Chr18:1655442 8.80E-37 dispersed
Cmo14g01923 Cmo-Chr14:14273940 Cmo06g01273 Cmo-Chr6:9595662 1.54E-23 transposed
Cmo14g01922 Cmo-Chr14:14271980 Cmo06g01273 Cmo-Chr6:9595662 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74429 PF07714 PK_Tyr_Ser-Thr 7.60E-62 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01273 Cmo_Chr06 FPKM 5.468716 6.031901 10.958323 10.824576 8.63196 9.026064 7.317333 16.949266 14.466763 14.224629