Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01274 ATGGAAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGAAACAATTGCCAGAGCTCCCAAAGAGATTCATGAAATTGAGAATCGAGCAACCGAGATATTGCGGAGCTCAAGCAATGCATCAATGGCAGAGAGGTTGGAGGATGTCGAGGCTTTAGGTAATAAGCATGCCGTGGACAACCCTGAAGAGGTCGCTGCTGCGGTTGACATGAGCATTCGCAATGCCACTGCAAGGAGGGAGCTTGGATTCTTCTCGTGTGGAACCGGCAATCCCATTGATGATTGCTGGCGTTGTGACCCCAATTGGCAACAGAACCGCAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGTGGTCGCGACGGTCGATACTACGTCGTCACTGATTCCGGCAACGACAACCCTGTCAGTCCAAGGCCTGGCACTTTACGACATGCCGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGACGCTCGTGGAACCAATGTTCACATTGCTAATGGTGCTTGCATCACCATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACCCACCACAATGAGGTATCTTCACTTCATCCATCTACTCAGTTCATATTTTTGCCATTTTTCATAGACATTGCTTCACGTTGTGTAATGTTATTGGGACATAGTGATTCATACGTTAGGGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACATGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGGGGTAGTGCAAATCCTACTATCAATAGCCAGGGTAACAGATATGCTGCACCAACCAACCCTTTTGCAAAAGAGGTTACCAAGAGGGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAGGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCGGCAAGCTATGCTAGAGCCTCTAGTTTGGGAGCTAAATCCTCATCCATGGTTGCTTCCATAACAGCCAACGCCGGTGCACTTAACTGCCGACGAGGTCACGCCTGCTAG 1413 46.85 MEMAESGGWIRLFLLVVFMLFVETIARAPKEIHEIENRATEILRSSSNASMAERLEDVEALGNKHAVDNPEEVAAAVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRYYVVTDSGNDNPVSPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVSSLHPSTQFIFLPFFIDIASRCVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVASITANAGALNCRRGHAC 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9615807 9620035 + CmoCh06G012740.1 Cmo06g01274 384836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01274 470 PANTHER PECTATE LYASE 13 300 - -
Cmo06g01274 470 Gene3D - 98 463 IPR012334 -
Cmo06g01274 470 PANTHER PECTATE LYASE 18-RELATED 13 300 IPR045032 GO:0030570
Cmo06g01274 470 SMART amb_all 173 393 IPR002022 -
Cmo06g01274 470 PANTHER PECTATE LYASE 18-RELATED 316 467 IPR045032 GO:0030570
Cmo06g01274 470 Pfam Pectate lyase 184 385 IPR002022 -
Cmo06g01274 470 SUPERFAMILY Pectin lyase-like 73 465 IPR011050 -
Cmo06g01274 470 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Cmo06g01274 470 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Cmo06g01274 470 PRINTS Pollen allergen Amb family signature 441 464 IPR018082 -
Cmo06g01274 470 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Cmo06g01274 470 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Cmo06g01274 470 PANTHER PECTATE LYASE 316 467 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01274 Cmo08g01006 CCT
Cmo06g01274 Cmo17g00119 CCT
Cmo06g01274 Cmo17g00119 ECH
Cmo06g01274 Cmo08g01006 ECH
Cmo06g01274 Cmo14g01918 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01274 Cmo-Chr6:9615807 Cmo18g00180 Cmo-Chr18:1237313 0 dispersed
Cmo14g01918 Cmo-Chr14:14249841 Cmo06g01274 Cmo-Chr6:9615807 0 wgd
Cmo17g00119 Cmo-Chr17:645851 Cmo06g01274 Cmo-Chr6:9615807 0 wgd
Cmo19g00155 Cmo-Chr19:944910 Cmo06g01274 Cmo-Chr6:9615807 0 wgd
Cmo02g01742 Cmo-Chr2:9932597 Cmo06g01274 Cmo-Chr6:9615807 0 wgd
Cmo06g01274 Cmo-Chr6:9615807 Cmo08g01006 Cmo-Chr8:6539045 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01274 K01728 - csv:101218188 825.469