Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01274 | ATGGAAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGAAACAATTGCCAGAGCTCCCAAAGAGATTCATGAAATTGAGAATCGAGCAACCGAGATATTGCGGAGCTCAAGCAATGCATCAATGGCAGAGAGGTTGGAGGATGTCGAGGCTTTAGGTAATAAGCATGCCGTGGACAACCCTGAAGAGGTCGCTGCTGCGGTTGACATGAGCATTCGCAATGCCACTGCAAGGAGGGAGCTTGGATTCTTCTCGTGTGGAACCGGCAATCCCATTGATGATTGCTGGCGTTGTGACCCCAATTGGCAACAGAACCGCAAACGTCTTGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGTGGTCGCGACGGTCGATACTACGTCGTCACTGATTCCGGCAACGACAACCCTGTCAGTCCAAGGCCTGGCACTTTACGACATGCCGTCATCCAAGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAACTGATCATGAACAGTTTCAAGACAATTGACGCTCGTGGAACCAATGTTCACATTGCTAATGGTGCTTGCATCACCATCCAGTTTGTGACTAATGTTATTGTCCATGGTCTAAATATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGATCATAATTCACTCTCTAACTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCACCAACAATTACTTCACCCACCACAATGAGGTATCTTCACTTCATCCATCTACTCAGTTCATATTTTTGCCATTTTTCATAGACATTGCTTCACGTTGTGTAATGTTATTGGGACATAGTGATTCATACGTTAGGGATAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACATGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGGGGTAGTGCAAATCCTACTATCAATAGCCAGGGTAACAGATATGCTGCACCAACCAACCCTTTTGCAAAAGAGGTTACCAAGAGGGTTGAGACAGCTGAATCTGAGTGGAAAAACTGGAATTGGAGATCAGAGGGAGACCTATTGATGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCGGCAAGCTATGCTAGAGCCTCTAGTTTGGGAGCTAAATCCTCATCCATGGTTGCTTCCATAACAGCCAACGCCGGTGCACTTAACTGCCGACGAGGTCACGCCTGCTAG | 1413 | 46.85 | MEMAESGGWIRLFLLVVFMLFVETIARAPKEIHEIENRATEILRSSSNASMAERLEDVEALGNKHAVDNPEEVAAAVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRYYVVTDSGNDNPVSPRPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVSSLHPSTQFIFLPFFIDIASRCVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAESEWKNWNWRSEGDLLMNGAFFTPSGAGASASYARASSLGAKSSSMVASITANAGALNCRRGHAC | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9615807 | 9620035 | + | CmoCh06G012740.1 | Cmo06g01274 | 384836 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01274 | 470 | PANTHER | PECTATE LYASE | 13 | 300 | - | - | |
Cmo06g01274 | 470 | Gene3D | - | 98 | 463 | IPR012334 | - | |
Cmo06g01274 | 470 | PANTHER | PECTATE LYASE 18-RELATED | 13 | 300 | IPR045032 | GO:0030570 | |
Cmo06g01274 | 470 | SMART | amb_all | 173 | 393 | IPR002022 | - | |
Cmo06g01274 | 470 | PANTHER | PECTATE LYASE 18-RELATED | 316 | 467 | IPR045032 | GO:0030570 | |
Cmo06g01274 | 470 | Pfam | Pectate lyase | 184 | 385 | IPR002022 | - | |
Cmo06g01274 | 470 | SUPERFAMILY | Pectin lyase-like | 73 | 465 | IPR011050 | - | |
Cmo06g01274 | 470 | PRINTS | Pollen allergen Amb family signature | 121 | 138 | IPR018082 | - | |
Cmo06g01274 | 470 | PRINTS | Pollen allergen Amb family signature | 181 | 197 | IPR018082 | - | |
Cmo06g01274 | 470 | PRINTS | Pollen allergen Amb family signature | 441 | 464 | IPR018082 | - | |
Cmo06g01274 | 470 | PRINTS | Pollen allergen Amb family signature | 245 | 266 | IPR018082 | - | |
Cmo06g01274 | 470 | PRINTS | Pollen allergen Amb family signature | 145 | 170 | IPR018082 | - | |
Cmo06g01274 | 470 | PANTHER | PECTATE LYASE | 316 | 467 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g01274 | Cmo08g01006 | CCT | |
Cmo06g01274 | Cmo17g00119 | CCT | |
Cmo06g01274 | Cmo17g00119 | ECH | |
Cmo06g01274 | Cmo08g01006 | ECH | |
Cmo06g01274 | Cmo14g01918 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01274 | Cmo-Chr6:9615807 | Cmo18g00180 | Cmo-Chr18:1237313 | 0 | dispersed | |
Cmo14g01918 | Cmo-Chr14:14249841 | Cmo06g01274 | Cmo-Chr6:9615807 | 0 | wgd | |
Cmo17g00119 | Cmo-Chr17:645851 | Cmo06g01274 | Cmo-Chr6:9615807 | 0 | wgd | |
Cmo19g00155 | Cmo-Chr19:944910 | Cmo06g01274 | Cmo-Chr6:9615807 | 0 | wgd | |
Cmo02g01742 | Cmo-Chr2:9932597 | Cmo06g01274 | Cmo-Chr6:9615807 | 0 | wgd | |
Cmo06g01274 | Cmo-Chr6:9615807 | Cmo08g01006 | Cmo-Chr8:6539045 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01274 | K01728 | - | csv:101218188 | 825.469 |