Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01278 ATGTATTATAATGGAGCGAACGAGATGAAGCATAGGTTGCCAGTCCACGAGTTATGGCTATCAGGCAAGATGTTTGATAAAATGTCTGCAAATGTAAAGCCAAGGGGAGGCTTCTTAGTCAATTTTGTTGGATTTTGGTTCACTACCAATCTTTTGTTCTGTACTTCACAAGGGTTAAACTTAGAAGGGCTGTCCCTTTTAGAGCTGAAAAGGACACTTAAGGATGAGTTTGGTAGTTTAAAGAACTGGAACCCTGCGGACAGGACACCGTGCGGTTGGATCGGTGTGCAATGCACTTCTGGTGAAGCTCCAGTCGTATGGTCACTCGACTTGAAGTCGAAGAAGCTCTCTGGATCCGTGAACCCCGTTATCGGTAACTTGATTCACTTAACTTATCTTGATCTATCTTTCAATGAGTTCACTGGGAACATTCCCAAAGAGATTGGAAACTGTTCATATCTTGAATATCTTTTTCTTAACAACAACATGTTTGAGGGGAGAATCCCAGCCGAGTTAGGGAATCTATCTGTCTTGAGGAGTTTGAATATCTGTAACAATGTACTAAGTGGTTCAATCCCGGAGGAGATCGGGAAGTTATCGTCGTTAGTCGAGTTCGTGGCGTATACGAACCAGCTAACGGGATCGTTGCCTCGTTCTATTGGGAATCTTACGAAACTTAAGAGGTTTAGAGCTGGACAGAATGGTATCTCTGGAAGTATACCTTCTGAGATAAGTGGATGCCAAAGTCTTAATGTGCTTGGTCTTGCTCAAAACGAGATAGGAGGGGAGCTACCGAGGGAGCTCGGGATGCTTCGTAACTTAACCGAGATGGTTCTATGGGGTAACCAGTTTTCTGGTAGCATTCCGGAGGAGCTTGGGAAGTGTAGGAGTCTCGAGGTCGTGGCGTTGTATGCTAATAATCTGGTTGGCTCCATACCAAAGGCATTGGGGAATCTCAGCTCTCTTAAGAGGCTGTATCTCTACAGAAATGGCCTTAATGGGACGATTCCAAAGGAAATTGGTAATCTTTCTTTGGTTGAAGAGGTTGATTTCTCAGAGAACTCTTTAAATGGTGACATTCCCTCTGAGTTAAGTAAGATCAAGGGTCTGCGCTTGCTTTTTCTCTTCAAGAATCTGCTGACTGGTGTAATACCTGATGAACTTAGTACGTTGAAGAACTTGAAACGGCTCGACCTATCGATAAATGATCTTAGAGGACGTATACCGTTTGGTTTTCAATATTTGACTAAGATGGTACAACTGCAGCTGTTTGATAACTCACTCAGTGGTAGCATTCCTTCACAGCTCGGACGTTACAGCCGACTTTGGGTTGTCGATTTTTCAGTAAACAACCTAACAGGGACGATACCGTCTCACCTTTGTCGACATTCGAACCTGAGTATATTGAACTTGGAGTCCAACAAGCTATATGGAAACATCTCTTCTGGGATTCTGAATTGCAGATCTTTGGTGCAGCTTCGTGTCGGTGGGAACATGCTTACCGGGGCGTTTCCATCCGAGCTTTGCAGCTTGGAGAACCTTTCAGCTATTGAACTCGGCGACAATAGATTCGATGGTCGGATTCCTTTGGATATTGGAAGATGTAAGAAGTTGCAAAGGCTTGAAATTGCAAACAATTTGTTCACATCTAAGCTGCCAAAGGAAATTGGAAAGCTCACTCAATTGGTGACTTTGAATGTTTCATCAAATCGACTTGATGGCGAGTTACCGGTTGAATTGTTCAAGTGCAAGATGCTTCAACGAGTCGATCTGAGCCACAACGCGTTTACGGGGTCGTTACCGAATGAGATCGGATCACTTACTCAGCTGGAGTTACTGATCTTGTCGGGAAACAAGTTGTCAGGGAACATACCTGCAGGAGTTGGAAAGATGTCCCGAATGACAGAGTTGAAGATTGGTAGAAACATGTTTTTTGGTGAAATTCCAAAGGAGTTGGGGTCACTTTTAGGCTTGCAAATTGCAATGGATCTTAGTTATAATAAGCTATCAGGGAGAATACCACCAGACCTGGGAAGACTATATCTTCTAGAAATTCTGCTGCTGAATAACAATGATTTGAGTGGACAAATTCCAAGAGAGTTTGAGAACTTATCTAGTCTATCCGTCTGCAACTTCTCGTACAACGACCTTACGGGGCCGATACCGTTGACACCATTGTTTCAGAACATGGCCATCGATAGCTTTCGAGGTAACGACGGACTTTGCGGCGGAGCTCTTGGTGAATGCAATGGGGATTCTTATTTTGAGAGTGAAAATACATCAAGAGGTAAAATCATCACAGGAATTGCTTGTGCTGTAGGTGGGGTTTCTCTCATTTTAATTGTGATTATTTTGTATCAAATGAGATGTCGAGATGAGGCTGAGATACCGTGCTCGGACTCGGACTTGGACTCGGGTTTTTACTTACCTCCCAAGGAGGGATTTAGCTTCCATGATCTGGTTGAAGTCACAAATAACTTCCATGACAGTTATATTATTGGAAAGGGTGCTTGTGGGACAGTTTATAAAGCCATGGTTCATACTGGACAGATCATTGCTGTTAAGAAGCTGGCATCAAATAGGGAAGGGAGTGATGTCGAAAACAGTTTCCAGGCCGAAATTTTGACGCTCGGAACGATAAGGCATCGAAATATTGTTAAGCTGTATGGATACTGCTACCACCAGGGTTTCAATCTGCTTCTTTATGAATACATGGAAAAGGGTAGTTTAGGTGAAGTAATTCACGGGTCGTCTTGTTGCTTGGATTGGCCAACTCGGTTCACGATTGCGATCGGAGCTGCAGAAGGTCTTGCGTATTTGCATCATGACTGCAAACCAATGATAGTTCATCGTGATATCAAGTCGAATAATATTCTCCTCGATGATCACTTTGAAGCTCATGTTGGTGATTTCGGTCTTGCGAAAGTTATCGACATGCCTCATTCTAAATCAATGTCAGTCGTTGCAGGCTCGTATGGATACATCGCTCCTGAATATGCATACACTATGAAGGTTACCGAAAAATGCGACATTTATAGTTTTGGCGTCGTTCTACTCGAGTTGTTAACGGGAAAAACTCCCGTTCAACCATTAGATCAGGGAGGTGATCTTGTAACATGGGTCAAAAATTTTATCCGTAATCATTCATTCACATCGAGAATGTTTGATTCTCGGTTGAACCTTCATGACCGAAGTATCGTCGAACACATGATGACCGTACTTAAAATCGCTCTAATGTGCACGAGTATGTCTCCTTTTGACCGGCCATCAATGCGGGATGTTGTATCGATGCTTATAGAGTCTAACGAGCAAGAAGTGAATTTCGTTCCATCTCCGAATTCCGATATTCCCTTCAAAGATAACACAGTATGA 3372 43.15 MYYNGANEMKHRLPVHELWLSGKMFDKMSANVKPRGGFLVNFVGFWFTTNLLFCTSQGLNLEGLSLLELKRTLKDEFGSLKNWNPADRTPCGWIGVQCTSGEAPVVWSLDLKSKKLSGSVNPVIGNLIHLTYLDLSFNEFTGNIPKEIGNCSYLEYLFLNNNMFEGRIPAELGNLSVLRSLNICNNVLSGSIPEEIGKLSSLVEFVAYTNQLTGSLPRSIGNLTKLKRFRAGQNGISGSIPSEISGCQSLNVLGLAQNEIGGELPRELGMLRNLTEMVLWGNQFSGSIPEELGKCRSLEVVALYANNLVGSIPKALGNLSSLKRLYLYRNGLNGTIPKEIGNLSLVEEVDFSENSLNGDIPSELSKIKGLRLLFLFKNLLTGVIPDELSTLKNLKRLDLSINDLRGRIPFGFQYLTKMVQLQLFDNSLSGSIPSQLGRYSRLWVVDFSVNNLTGTIPSHLCRHSNLSILNLESNKLYGNISSGILNCRSLVQLRVGGNMLTGAFPSELCSLENLSAIELGDNRFDGRIPLDIGRCKKLQRLEIANNLFTSKLPKEIGKLTQLVTLNVSSNRLDGELPVELFKCKMLQRVDLSHNAFTGSLPNEIGSLTQLELLILSGNKLSGNIPAGVGKMSRMTELKIGRNMFFGEIPKELGSLLGLQIAMDLSYNKLSGRIPPDLGRLYLLEILLLNNNDLSGQIPREFENLSSLSVCNFSYNDLTGPIPLTPLFQNMAIDSFRGNDGLCGGALGECNGDSYFESENTSRGKIITGIACAVGGVSLILIVIILYQMRCRDEAEIPCSDSDLDSGFYLPPKEGFSFHDLVEVTNNFHDSYIIGKGACGTVYKAMVHTGQIIAVKKLASNREGSDVENSFQAEILTLGTIRHRNIVKLYGYCYHQGFNLLLYEYMEKGSLGEVIHGSSCCLDWPTRFTIAIGAAEGLAYLHHDCKPMIVHRDIKSNNILLDDHFEAHVGDFGLAKVIDMPHSKSMSVVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGKTPVQPLDQGGDLVTWVKNFIRNHSFTSRMFDSRLNLHDRSIVEHMMTVLKIALMCTSMSPFDRPSMRDVVSMLIESNEQEVNFVPSPNSDIPFKDNTV 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9649766 9655823 - CmoCh06G012780.1 Cmo06g01278 384840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01278 1123 Gene3D Transferase(Phosphotransferase) domain 1 905 1113 - -
Cmo06g01278 1123 SMART serkin_6 827 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01278 1123 Gene3D Ribonuclease Inhibitor 415 756 IPR032675 -
Cmo06g01278 1123 Gene3D Ribonuclease Inhibitor 211 305 IPR032675 -
Cmo06g01278 1123 Gene3D Ribonuclease Inhibitor 59 210 IPR032675 -
Cmo06g01278 1123 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 34 1109 - -
Cmo06g01278 1123 Gene3D Ribonuclease Inhibitor 306 414 IPR032675 -
Cmo06g01278 1123 ProSitePatterns Serine/Threonine protein kinases active-site signature. 948 960 IPR008271 GO:0004672|GO:0006468
Cmo06g01278 1123 ProSiteProfiles Protein kinase domain profile. 827 1109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01278 1123 Pfam Protein kinase domain 828 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g01278 1123 Pfam Leucine rich repeat N-terminal domain 61 98 IPR013210 -
Cmo06g01278 1123 Gene3D Phosphorylase Kinase; domain 1 799 904 - -
Cmo06g01278 1123 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 34 1109 - -
Cmo06g01278 1123 SUPERFAMILY L domain-like 72 429 - -
Cmo06g01278 1123 SUPERFAMILY Protein kinase-like (PK-like) 807 1098 IPR011009 -
Cmo06g01278 1123 SMART LRR_typ_2 391 414 IPR003591 -
Cmo06g01278 1123 SMART LRR_typ_2 271 295 IPR003591 -
Cmo06g01278 1123 SMART LRR_typ_2 175 199 IPR003591 -
Cmo06g01278 1123 SMART LRR_typ_2 127 151 IPR003591 -
Cmo06g01278 1123 SMART LRR_typ_2 607 631 IPR003591 -
Cmo06g01278 1123 SMART LRR_typ_2 319 343 IPR003591 -
Cmo06g01278 1123 SMART LRR_typ_2 511 535 IPR003591 -
Cmo06g01278 1123 SMART LRR_typ_2 559 583 IPR003591 -
Cmo06g01278 1123 SMART LRR_typ_2 680 703 IPR003591 -
Cmo06g01278 1123 SUPERFAMILY RNI-like 349 718 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00065 Cmo-Chr3:1052989 Cmo06g01278 Cmo-Chr6:9649766 1.14E-60 dispersed
Cmo06g01278 Cmo-Chr6:9649766 Cmo17g00121 Cmo-Chr17:692314 0 dispersed
Cmo07g01367 Cmo-Chr7:7748464 Cmo06g01278 Cmo-Chr6:9649766 7.75E-64 dispersed
Cmo20g00862 Cmo-Chr20:4345946 Cmo06g01278 Cmo-Chr6:9649766 3.11E-28 dispersed
Cmo14g01912 Cmo-Chr14:14220544 Cmo06g01278 Cmo-Chr6:9649766 0 wgd
Cmo17g00120 Cmo-Chr17:661522 Cmo06g01278 Cmo-Chr6:9649766 0 wgd
Cmo06g01278 Cmo-Chr6:9649766 Cmo08g01010 Cmo-Chr8:6571076 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74430 PF00069 Pkinase 5.30E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01278 - - csv:101219053 1825.06