Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01279 ATGGAAGGATTGGTGGTTCGGTCGCCTTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGAAGTGTATTTGCAAAGACCGTATCGAAATCGCTGAAATGTAGAAGAGTAACGAGATTGAACACGAAGTATGGTAAAATCAGAGCGCATTCGTCGAATGCAAGTATCGGATCCGATGGATACAAGCACGAGGAGGAAAAGGAGGGCCAGCATGTTATTTCCAGCAGTGCACCTGCTGATAGTTCATCTAAAACTGAGAAGTCTCCAAATGGATTGCCTTATCCTCTTTCTATTGCGCTAGTACTAATTGGGTGCAGTTTAGTATTCTCACTGATTGCCTTTGTGAAAGGAGGACCATCGTCGATCTTGGCAGCAGTCGCGAAGTCAGGGTTCACTGCTGCTTTCTCCTTAATATTTGTCTCTGAAATTGGGGACAAGACATTTTTCATTGCTGCACTCTTGGCCATGCAATATAAAAAAGGACTGGTTCTGTTAGGATCTATGGGAGCTCTATCGCTTATGACAGTCCTCTCAGTTATAATTGGACGGATATTTCACTCAGTACCTGCTCAGTTCCAGACAACTTTACCAATTGGAGAATATGCGGCTGTAACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGAACTTCCCTCGAGTGTTCCTAAACAGGACAACGAGAGTCCTCCAGAACTTGATGAATATGTTGAAGCAGAGGAGCTTGTTAAAGAAAAGGTTTCGAAACGGCTCTCCAATCCTCTTGAAATCATCTGGAAGTCGTTCAGCCTTATATTTTTTGCTGAATGGGGTGATCGCTCAATGCTTGCAACCATTGCTCTTGGAGCTGCACAGTCTCCTTGGGGCGTGGCTACGGGAGCTATCACTGGACACCTAATTGCAACCACCATTGCCATTCTAGGAGGAGCACTTCTTGCAAATTACATTTCTGAAAAACTGGTCGGCTACGTGGGCGGTGTACTCTTCTTGATTTTTGCAGTAGCAACCTTTTTTGGAGTTTTCTGA 1071 44.63 MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYGKIRAHSSNASIGSDGYKHEEEKEGQHVISSSAPADSSSKTEKSPNGLPYPLSIALVLIGCSLVFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9660025 9663753 + CmoCh06G012790.1 Cmo06g01279 384841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01279 356 MobiDBLite consensus disorder prediction 79 100 - -
Cmo06g01279 356 ProSitePatterns Uncharacterized protein family UPF0016 signature. 154 163 IPR001727 -
Cmo06g01279 356 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 38 356 IPR001727 -
Cmo06g01279 356 MobiDBLite consensus disorder prediction 86 100 - -
Cmo06g01279 356 Pfam Uncharacterized protein family UPF0016 275 348 IPR001727 -
Cmo06g01279 356 Pfam Uncharacterized protein family UPF0016 145 223 IPR001727 -
Cmo06g01279 356 PANTHER PROTEIN PAM71-HOMOLOG, CHLOROPLASTIC 38 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01279 - - - bhj:120087383 621.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01441 Cmo-Chr2:8501254 Cmo06g01279 Cmo-Chr6:9660025 3.11E-27 dispersed
Cmo06g01279 Cmo-Chr6:9660025 Cmo15g01328 Cmo-Chr15:9105487 7.20E-51 dispersed
Cmo14g01911 Cmo-Chr14:14211508 Cmo06g01279 Cmo-Chr6:9660025 8.83E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g837 . . . . . . . . . . Cma06g01271 . Car06g01092 . . Cpe08g00377 . Bhi01g00013 . . . . . . . . . . . . . . . . Cone4ag0380 Lsi05g01803 . . Cme06g00417 . Blo07g00293 Bda11g00656 . . . . Bma06g01304 . Cmo06g01279 . . . . . . . . . . . . . . Cla05g00379 Cam05g0412 Cec05g0417 Cco05g0417 Clacu05g0408 Cmu05g0391 Cre05g0453 . Csa03g01136 Chy06g00402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010246 1 2 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01279 Cmo_Chr06 FPKM 1.044332 1.294287 0.0 0.412214 0.0 1.177256 0.266356 2.399692 2.137965 2.138719