Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01282 ATGACGAATCTCATTGCTTGGTTTATTCGAGATTATGGGAAAAGGATTATACCTCAGATACGATATCTTAAATCCTGTGGAGTAGGAGGACAAGATTGTTTTCTCACACTCGGAGTTCTTCGTGTGAGCCTAGGATGCTTTATATTTTTCTTTCTGATGTTTCTCTCTACGTCGAGAACAAGAAAATTACACGAACCTCGAAATGTCTGGCATTCTAGTTGGTGGAGCTTGAAGTTCATTGTGTTTATTGTTTCAATGTTGGTTCCATTCTTCTTCCCTCCAGCTCTTATCCAATTATATGGTGAAGTTGCTCGTGTAGGTGCAGGGATATTTCTCCTCCTCCAACTGGTAAGTGTTATCCAGTTTATCTCATGGTGGAACAAGTACTGGATGCCTGATGAGAAAATGAAGCAGATCTGCTCGCTTGGATTATTCACGTCGACGATCTTTTACATAGCTTCATTCTGCGGGATCGGTTTGATGTACTTCTTATATGTTCCAAAACTGAGATGTGTTCTCAATATATTCTTCATTTCTTGGACTTTGATTCTCCTCATTGTGATGATGGTTGTGTCTTTACATTCAAAGGTCAATAGAGGTCTGTTATCGTCCGGTATCATGGCTTCGTATGTCGTCTTCCTCTGCTGGTCTGCCATTAGAAGCGAACCGGCGACCGAGAAATGCAGTGCACAGAAGCAAGGGAGTGGGAATAGTGACTGGATTACTATACTTAGCTTCTTAATTGCTATCTGTGCAGTTGTCATGGCAACCTTCTCAACTGGTATTGATTCACAATCATTTCAGTTTCGTAAAGACGAGGCGAAAGAGGAAGATGACATACCTTACAAGTATGGTTTTTTCCATATCATATTCTCTCTAGGAGCCATGTACTTTGCAATGCTCTTCATCAGCTGGAACCTCAACAACTCAGCCACAAAGTGGAGCATGGATGTTGGATGGACAAGTACATGGGTTAAAATCATTAATGAATGGCTTGCAGCCTCAATATACTTGTGGACATTAATTTCTCCAGTGGTGAGACAGGCAAAGGTAAGGAATCATGAAGAAGATCACCACAAGAATTACAATCCTCTGAGTTCTACAAGCAAGAGAAGCTCTGCATACCGACTCTGCAACATGTTCAGGCAATCGTCTTCTCGCGCCTTCATCGCAATGGCGATCATTGTGGTGCATTTTGTGGCGTTTAGGTCTGCAGCTGTCACCGCTAATGCTGGGGGGGAGGAGTCTGTCCTTGAATTTTACATGCATGACATTCTCGGCGGTGGCAGCCCTACAGCGAGACCGATTACTGGCCTACTGGGGAACATATACACTGGTCAAGTACCCTTTGCCACACCTATAGACTTCCTTCCCCCAGACGATGGCATAGCAATTCCAAATGCTAATGGTGCTCTCCCCACTGTTAATGGCAACAATGGGATCCCTCTAGGGACTGGCTTGTCTGGTACTGCTTTTGCTGGAAATCCCAACCCACAAAATCTTCCCCAGACCCAATTGGGACCTGATGGGTTGGGACTAGGCTTTGGAACGATTACCGTCATCGATGACATCTTGACCACAGCACCGGAGTTGGGCTCACAGTTGATTGGCAAGGCACAAGGGGTGTATGTGGCTAGTTCTGCTGATGGGACTACACAGATGATGGCATTTACGGCCATGGTTGAAGGAGGAGAGTATGGTGACAGTCTCAACTTCTATGGAGTATTCAGGATTAATAGCCCCTCATCACATTTGTCTGTGACTGGAGGAACTGGCAAGTTCAAGCACGCACGTGGGATTGCAGAGGTGCGCTCGCTCATTCCTCCTGGCCAGCACGTCGCTGATGGAGCAGAAACATTGCTGCGATTCATTGTCCATCTAAGCTATTGA 1890 45.19 MTNLIAWFIRDYGKRIIPQIRYLKSCGVGGQDCFLTLGVLRVSLGCFIFFFLMFLSTSRTRKLHEPRNVWHSSWWSLKFIVFIVSMLVPFFFPPALIQLYGEVARVGAGIFLLLQLVSVIQFISWWNKYWMPDEKMKQICSLGLFTSTIFYIASFCGIGLMYFLYVPKLRCVLNIFFISWTLILLIVMMVVSLHSKVNRGLLSSGIMASYVVFLCWSAIRSEPATEKCSAQKQGSGNSDWITILSFLIAICAVVMATFSTGIDSQSFQFRKDEAKEEDDIPYKYGFFHIIFSLGAMYFAMLFISWNLNNSATKWSMDVGWTSTWVKIINEWLAASIYLWTLISPVVRQAKVRNHEEDHHKNYNPLSSTSKRSSAYRLCNMFRQSSSRAFIAMAIIVVHFVAFRSAAVTANAGGEESVLEFYMHDILGGGSPTARPITGLLGNIYTGQVPFATPIDFLPPDDGIAIPNANGALPTVNGNNGIPLGTGLSGTAFAGNPNPQNLPQTQLGPDGLGLGFGTITVIDDILTTAPELGSQLIGKAQGVYVASSADGTTQMMAFTAMVEGGEYGDSLNFYGVFRINSPSSHLSVTGGTGKFKHARGIAEVRSLIPPGQHVADGAETLLRFIVHLSY 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9670497 9680679 - CmoCh06G012820.1 Cmo06g01282 384844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01282 629 Gene3D - 496 621 IPR044859 -
Cmo06g01282 629 PANTHER SERINE INCORPORATOR 1 359 IPR005016 GO:0016020
Cmo06g01282 629 Pfam Serine incorporator (Serinc) 271 347 IPR005016 GO:0016020
Cmo06g01282 629 Pfam Serine incorporator (Serinc) 5 270 IPR005016 GO:0016020
Cmo06g01282 629 Pfam Dirigent-like protein 497 605 IPR004265 -
Cmo06g01282 629 PANTHER SERINC-DOMAIN CONTAINING SERINE AND SPHINGOLIPID BIOSYNTHESIS PROTEIN 1 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01282 K23544 SERINC1; serine incorporator 1 - pvy:116142236 789.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00246 Cmo-Chr4:1221353 Cmo06g01282 Cmo-Chr6:9670497 5.29E-37 dispersed
Cmo05g01341 Cmo-Chr5:10410954 Cmo06g01282 Cmo-Chr6:9670497 8.01E-49 dispersed
Cmo06g01282 Cmo-Chr6:9670497 Cmo12g01268 Cmo-Chr12:11247447 2.39E-70 dispersed
Cmo20g00044 Cmo-Chr20:273078 Cmo06g01282 Cmo-Chr6:9670497 3.78E-06 dispersed
Cmo20g00634 Cmo-Chr20:3113918 Cmo06g01282 Cmo-Chr6:9670497 2.37E-11 dispersed
Cmo12g01269 Cmo-Chr12:11252855 Cmo06g01282 Cmo-Chr6:9670497 3.85E-10 transposed
Cmo14g01910 Cmo-Chr14:14210942 Cmo06g01282 Cmo-Chr6:9670497 4.91E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g831 . . . . . . . . . . Cma06g01274 . Car06g01095 . . Cpe08g00373 . Bhi01g00020 . . . Hepe05g1854 . . . . . . . . . Cone14ag0204 . . . . . . Cme06g00421 . . . . . . . . . Cmo06g01282 . . . . . . . . . . . . . . Cla05g00383 Cam05g0416 Cec05g0421 Cco05g0421 Clacu05g0412 Cmu05g0395 Cre05g0457 . Csa03g01140 Chy06g00406 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006899 2 1 1 2 0 1 0 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01282 Cmo_Chr06 FPKM 0.216334 0.277419 0.259661 0.159373 1.380681 1.410559 1.473759 2.450607 2.034315 2.260073
Cmo06g01282 Cmo_Chr00 FPKM 0.102381 0.0 0.0 0.0 0.57497 0.571193 0.422761 0.319775 0.228766 0.336343