Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01285 ATGGCAGAAGTGAAGCTCCATGGAACTTGGCCGAGCCCTTTCAGTTACAGAGTGATTTGGGCGTTGAAGCTCAAAGGCATTCCCTACGAGTACGTAGAAGAAGATCTCTCCAACAAGAGCCCTCTGCTTTTGCACTACAATCCGGTTCACAAGAAGATTCCGGTGCTCGTCCATGGCGGAAAACCGATCTGCGAATCCACGATCATCCTCGAGTACATCGACGAAACTTGGCCGGAGAAGCCGCTGCTTCCGTCGGATCCTTTTGAGAGAGCGACGGCGAGATTCTGGATCAAATTCATTGAGGATAAGGGCCCTGCGGTTTTTATGATATTCCGTGCGAAGAGTGATGAAGAGCGGGAGAATGCTAAGAAGCCGAGCTTAGAGATGCTGAGAACCGTCGAGGAATGGGGATTCCGCGGTGGCGATGGCAGAGAGAGGAAGTTCTTCGGCGGAGATGAGATCGGAATGGCGGATTTGGCGTTCGGCTGGGTTGCGCACTGGATAGGAGTGATTGAAGAAGTGGTGGACGTCAAATTTCTGGACGCCAACGAGTTCCCTAAGGTCTTTGAATTCATGGCGCATAGCGGCTTACTCGGAGGCGGCATACGGTGGAAAACAAGGAAGAAAATGCGAGAGAATGTCTCCGATGAACGAGGCCAACAAAATGGAACCCTAACTGTTCTTCTCCAAGACCCTTTCGAGGTTTTGGGTTCTGATCTATTAATGGCGATTCTTGGCTACGTTGATTCACGCAGCGTGGCACTTTCTCTTCTTGTCTCTCGATCCTGGTATGGAATTGCTTCCAGCGATTCCCTATGGAGTTCTAAGTGTGTGGAACTGTGGCTTGGGATTGCACATATCCCTAGATTGGCGCAAACCCGAGGTCTTCCAAAGATGGCTGCCTATTCGTTATCTGTCATGGATGGCAATCGGACTCGCATTATGAGGGAGGATTTATGTGACCACGCTTGGCAATTTCACTTCAATAAGGAAGCTCCTGTTTACTGGCGAGATCTTGATCCGTATTGGCAAGGTAGCCACCTTCTCATGCGCCGTTATTTCCACCCCGATGGGAGCCAAACTGCAGATCCTGATGACAGAGTATGGGGTGGCCATGAATGCTGCTTTTCCACTGTAACCACCGTTGTTGGTGATGGGAAGATCAGAGAACACTATGTGAGGATTAACAAATGGCCAAAAGGATGTTGGTGTCGAGGAATGAAGATTGGAGCTGGGAGATGTCGAATCACTTCACTTCGTACTCGAGCATAG 1272 49.92 MAEVKLHGTWPSPFSYRVIWALKLKGIPYEYVEEDLSNKSPLLLHYNPVHKKIPVLVHGGKPICESTIILEYIDETWPEKPLLPSDPFERATARFWIKFIEDKGPAVFMIFRAKSDEERENAKKPSLEMLRTVEEWGFRGGDGRERKFFGGDEIGMADLAFGWVAHWIGVIEEVVDVKFLDANEFPKVFEFMAHSGLLGGGIRWKTRKKMRENVSDERGQQNGTLTVLLQDPFEVLGSDLLMAILGYVDSRSVALSLLVSRSWYGIASSDSLWSSKCVELWLGIAHIPRLAQTRGLPKMAAYSLSVMDGNRTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHLLMRRYFHPDGSQTADPDDRVWGGHECCFSTVTTVVGDGKIREHYVRINKWPKGCWCRGMKIGAGRCRITSLRTRA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9685452 9692461 - CmoCh06G012850.1 Cmo06g01285 384847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01285 423 CDD GST_N_Tau 4 77 - -
Cmo06g01285 423 Pfam Glutathione S-transferase, N-terminal domain 3 75 IPR004045 -
Cmo06g01285 423 Gene3D - 83 196 - -
Cmo06g01285 423 Gene3D Glutaredoxin 1 82 - -
Cmo06g01285 423 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 217 IPR010987 -
Cmo06g01285 423 SUPERFAMILY GST C-terminal domain-like 75 192 IPR036282 -
Cmo06g01285 423 Gene3D - 221 343 - -
Cmo06g01285 423 SUPERFAMILY F-box domain 230 289 IPR036047 GO:0005515
Cmo06g01285 423 SFLD Main.3: Omega- and Tau-like 1 194 IPR045073 -
Cmo06g01285 423 CDD GST_C_Tau 87 192 IPR045074 GO:0004364|GO:0006749
Cmo06g01285 423 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 193 IPR045073 -
Cmo06g01285 423 SFLD Glutathione Transferase (cytosolic) 1 194 IPR040079 -
Cmo06g01285 423 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cmo06g01285 423 PANTHER GLUTATHIONE S-TRANSFERASE 1 193 - -
Cmo06g01285 423 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01285 - - K00799 csv:101220252 368.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01285 Cmo-Chr6:9685452 Cmo14g01906 Cmo-Chr14:14201254 2.08E-87 dispersed
Cmo16g00500 Cmo-Chr16:2417204 Cmo06g01285 Cmo-Chr6:9685452 1.13E-35 dispersed
Cmo06g01285 Cmo-Chr6:9685452 Cmo06g01286 Cmo-Chr6:9691547 3.03E-75 tandem
Cmo14g01908 Cmo-Chr14:14206638 Cmo06g01285 Cmo-Chr6:9685452 1.07E-94 transposed
Cmo14g01905 Cmo-Chr14:14199702 Cmo06g01285 Cmo-Chr6:9685452 8.00E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g826 . . . . . . . . . . . Cma14g01862 . . . Cpe08g00370 Cpe03g01560 Bhi01g00028 . . . . . . . . . . . . . . . . . Lsi05g01794 . . Cme06g00428 . . . . . . . . . Cmo06g01285 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010011 0 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01285 Cmo_Chr06 FPKM 10.012783 10.040297 9.991199 9.033895 3.678279 3.01571 2.673626 18.016914 18.553432 15.981318