Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01286 ATGGGAGAAGTGAAGCTCCATGGAAGTTGGGCGAGTCCTTTCAGTAACAGAGTCGTCTGGGCGCTGGAACTCAATGGCATACCCTACGAGTTCGTACAGGAAGATCTGACGAAGAAAAGCCCTCTGCTCCTTCACTACAATCCCGTCTACAAGATGATTCCGGTGCTCGTCCATGGCGGAAAGGCGATCTGCGAATCCTCCATCATCCTTGAGTACATCGACGAGATCTGGCCGCAAAAGCCTCTGCTACCGATCGATCCTCTCGACAGAGCCGCCGCTCGGTTCTGGATCAAGTTCATAGAGGACAAGGAAGCAACGATGAGGAGGATTTTTGTGGCGAGAGGGGAAGATAAAGAGGAGGCGAGGCGAGCGAGCTTGGAAGTGCTGAGGACGGTCGAGGAGAGAGGCCTCGGTGGCGGCGGGAAGTTCTTCGGAGGAGATGCGATTAATATGGTGGATTTGACGTACGGATGGATCGCAGTGTGGATGAAGGTTTTGGAAGAAGTATTGGATATGAAGCTGATTGAAGGCCCCGAGTTCCCTCGCCTTCAAGCATGGGCGGAGAGTTTCCGAACCGCCGCCGTCATCAGAGATCACATTCCCGACCACCAAAAAATGGTGATACATTTACGGCGCCGCCGTGAGGAACTGCTTCTGCTTCAATCTGCACCAAGCTAG 678 53.54 MGEVKLHGSWASPFSNRVVWALELNGIPYEFVQEDLTKKSPLLLHYNPVYKMIPVLVHGGKAICESSIILEYIDEIWPQKPLLPIDPLDRAAARFWIKFIEDKEATMRRIFVARGEDKEEARRASLEVLRTVEERGLGGGGKFFGGDAINMVDLTYGWIAVWMKVLEEVLDMKLIEGPEFPRLQAWAESFRTAAVIRDHIPDHQKMVIHLRRRREELLLLQSAPS 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9691547 9692638 + CmoCh06G012860.1 Cmo06g01286 384848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01286 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Cmo06g01286 225 CDD GST_N_Tau 4 77 - -
Cmo06g01286 225 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Cmo06g01286 225 SUPERFAMILY GST C-terminal domain-like 75 215 IPR036282 -
Cmo06g01286 225 SFLD Main.3: Omega- and Tau-like 1 218 IPR045073 -
Cmo06g01286 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 214 IPR045073 -
Cmo06g01286 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 217 IPR010987 -
Cmo06g01286 225 SFLD Glutathione Transferase (cytosolic) 1 218 IPR040079 -
Cmo06g01286 225 Gene3D - 86 220 - -
Cmo06g01286 225 Gene3D Glutaredoxin 1 85 - -
Cmo06g01286 225 PANTHER GLUTATHIONE S-TRANSFERASE 1 214 - -
Cmo06g01286 225 Pfam Glutathione S-transferase, N-terminal domain 6 80 IPR004045 -
Cmo06g01286 225 CDD GST_C_Tau 87 209 IPR045074 GO:0004364|GO:0006749
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01286 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 273.478
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01286 Cmo14g01905 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01286 Cmo-Chr6:9691547 Cmo14g01906 Cmo-Chr14:14201254 1.87E-99 dispersed
Cmo06g01285 Cmo-Chr6:9685452 Cmo06g01286 Cmo-Chr6:9691547 3.03E-75 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g816 Blo01g00311 . . Bda08g00016 . . . Bma05g01266 . . . Cma14g01861 . . . Cpe08g00369 Cpe03g01558 Bhi01g00030 . . . . . . . . . . . . . . . . . Lsi05g01792 . . Cme06g00431 . . . . . . . . . Cmo06g01286 Cmo14g01905 . . . . . . . . . . . . . . . . . . . . . Csa03g01146 Chy06g00410 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01286 Cmo_Chr06 FPKM 8.205787 10.257492 9.352357 10.994938 15.161041 12.865362 16.291895 8.73807 7.693165 7.896608
Cmo06g01286 Cmo_Chr00 FPKM 7.012745 7.005735 3.655518 4.328198 5.113132 6.070316 5.507826 2.853236 3.772966 3.372567