Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01288 ATGGAGCAAGAAGAATATACAAAAGAAGAAATTAACTGGAGTTATATTGAATTTATTGATAATCAGGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGCGTCATTGCGCTTCTGGATGAGGCTTGCATGTTTCCGAGATCCACACATGAGACTTTTGCTCAGAAACTATATCAAACTTTTAGGGACCATAAGCGATTTAGTAAGCCTAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGCGATGTTACGTACCAAACTGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCGGAGCATCAAGCACTGTTGGGTGCTTCTAAGTGCTCCTTTGTTGCAGGGCTATTCCCCCCTTTACCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGGACTAGATTTAAGCAACAACTTCAAACTTTGCTCGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCATCCATCTTTGAGAATAATAATGTTTTACAGCAGCTCCGATGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACCAGGAAGACGTTTGATGAATTTATTGGTCGGTTTACTATCTTGGCACCTGATGTTTTGAAGGGGAGCTCTGATGAAGCCAATGCGTGTAAGAAGCTTTTGGAGAAAGTTAACCTTAATGGGTATCAGATTGGTAAAACCAAAGTGTTTCTTAGGGCTGGTCAAATGGCACAATTAGATGGCTGCCGAACTGAGGTCTTGGGAAGATCTGCTAGTGTTATCCAAAGGAAAGTTCGCTCATATTTGGAACGGAATCGTTTTATTTCGTTGCGGTTGGCTGCTATACAAATTCAAGCACTTTGTAGAGGGGAAGTTGCACGCCAGCAGTATGAAAACATCAGAATGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGCATGTGTTCTGCCCGAAGTTCCTATAAAAGATTGCGCTCTTCAGCTGTAGCTATTCAGGCTGGTATCCATGGCATGGTTGCTCGTAAAGAGCTCAAGTTCAGGAGGGATACAAGAGCTGCAATTATCATTCAGGCTGCTAAGGAAACTGGCGCTCTCCAAGCTGCCAAAGATATGTTGGAAAAGCAAGTGGAAGAACTAACATTGAGATTGGAGCAAGAGAAACAAATGAGGGCTGACATGGAGGATGCCAAGACTCAAGAAAACACAAAATTGAAGTCTGCTTTGGAAGAAATACAAACTCAATTTCAGGAAACGAAAGCACTGCTTATTGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAGGAAATCCGTGAAGCTTCAAAGAAAGTAGTTGAGGAAGTCCCAATAGCTGCAAAGAAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGAAAGTAGTTGAGGAAGTCCCAATAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGTAGCTGCAAAGGAAGTAGTTGAGGAAGTCCCAGCGAAGCAAGTAGTCGAGGAAGTCCCAGTAGCTGCAAAGGAAGTTGTTGAGGAAGTCCCAGTAGCTGCAAAGAAAGTAGTTGAGGAAGTCCCAGTAGCTGCACAGAAAGTAGTTGTGGAAGTCCCAGTCATACAGGAGGTTCCAGTTGTTGATCATGAGCTTATCAATAAGCTAACTACTGAAAATGAAGAACTTAAGGCTCTTGTTAGTTCTTTGGAAAGTAAAATTGATGAAACAGAAAGGAAATTTGAGGAAAGTAACAGACTTAGTGAAGAGCGGCTGAAGCAGGCTACGGAGGCAGAGTCAAAGATAATAGAATTAAAGACTGCCATGCAAAGGCTTGAGGAAAAGTTATCTGACTTGGAAACTGAGGACCAAATTCTGAGGCAGCAAGCACTGCAAAAGCCTCCTTCAAGAAAAATGTCTGGACATATAACAATGCAGCCTTTGGAGAATGGCCACCTTGAATTATTAAGCAATGCACCATCAAAAAAGTATGGTACCGATGCTGATGCAAAATTGAGGAGATCCCAAATTGAAAGGCAGAACGAAGGCATGGATGCTCTATCGAAATACTTAACACGGGATCTTGGGTTCAGTGAGGGAAAACCTGTTGCTGCTTTTGTAATTTATAAATCTCTTCTCCATTGGAGATCATTTGAAGCAGAAAAAACAAGTGTATTTGATCGTCTTATTCAGATAATTGGTTCTGCAATTGAGAATCAGGATGATTATGATCACATGGCTTATTGGTTATCCAACACAACTACATTGTTGTTTCTTCTTCAAAAGAGTTTAAAAGCCACACCACGAAAGCCTCCCACCCCGACATCATTGTTTGAGCGAATGACCCAAGGGTTTCGTTCATCTTCTGCCAACCTTCCAGTTGGCACCCTTGATGTTGTGCGGCAAGTTGAAGCCAAATATCCTGCTCTACTTTTCAAGCAGCAGCTAACAGCGTATGTAGAAAAGATATATGGAATAGTTAGAGACAACCTGAAGAAGGAACTATCGCCGTTGCTTTCAACTTGTGTCCAAGCTCCCAAAACTTCGGAAGAGAATATTGAGGAATCATCTGACGAGGCAAAGAGTAGCAGCCTTCTCAATAGTTCATGGGGCAGCATCATCCATCACCTTAATCATCATCTTAGTAGATTGCAGACGAACTTCGTGCCTTCCGTTTTGGTCCAGAAGATATTCACTCAGGTTTTTTCATACATCAACGTACAGCTTTTCAATAGTCTTCTACTTCGTCAAGAGTGCTGCACGTTTAGTAATGGAGAATATGTGAAGTCAGGACTTGCTGAGTTAGAGAGTTGGTGTACCCAAGCCAAAGAAGAGTATGTCGGGTTATCTTGGGATGAGCTAAAACCAGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGAAATTACAAATGACCTCTGTCCAATATTAAGCGTTCAGCAGCTTTATAGAATATGTACTCTTTATTGTGACGACAATTACAATACCAGAAGCGTAGCTGAAGAGGTTATTTCTAGCATGAAGGTTTTGATGCCCGAAGATACCAATGATGAAGACAATAATTCCTTTTTGTTGGATGACAATTCCAGCATACCTTTCTCAGTCGATGACATATCCAGTTCCTTGCAAGATAAGAATTTTCAAGATATTAAGCCTCCAGCAGAACTACTTGAGAATCCGGTCTTCCAATTTTTACAGGAATAA 3315 41.54 MEQEEYTKEEINWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAQKLYQTFRDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLGASKCSFVAGLFPPLPEETSKSSKFSSIGTRFKQQLQTLLETLNATEPHYIRCVKPNNLLKPSIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFIGRFTILAPDVLKGSSDEANACKKLLEKVNLNGYQIGKTKVFLRAGQMAQLDGCRTEVLGRSASVIQRKVRSYLERNRFISLRLAAIQIQALCRGEVARQQYENIRMEAASIKIQKYWRMCSARSSYKRLRSSAVAIQAGIHGMVARKELKFRRDTRAAIIIQAAKETGALQAAKDMLEKQVEELTLRLEQEKQMRADMEDAKTQENTKLKSALEEIQTQFQETKALLIEEREAAKKVVEEREAAKKVVEEIREASKKVVEEVPIAAKKVVEEVPVAAKEVVEEVPVAAKKVVEEVPIAAKEVVEEVPVAAKEVVEEVPAKQVVEEVPVAAKEVVEEVPVAAKKVVEEVPVAAQKVVVEVPVIQEVPVVDHELINKLTTENEELKALVSSLESKIDETERKFEESNRLSEERLKQATEAESKIIELKTAMQRLEEKLSDLETEDQILRQQALQKPPSRKMSGHITMQPLENGHLELLSNAPSKKYGTDADAKLRRSQIERQNEGMDALSKYLTRDLGFSEGKPVAAFVIYKSLLHWRSFEAEKTSVFDRLIQIIGSAIENQDDYDHMAYWLSNTTTLLFLLQKSLKATPRKPPTPTSLFERMTQGFRSSSANLPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKELSPLLSTCVQAPKTSEENIEESSDEAKSSSLLNSSWGSIIHHLNHHLSRLQTNFVPSVLVQKIFTQVFSYINVQLFNSLLLRQECCTFSNGEYVKSGLAELESWCTQAKEEYVGLSWDELKPVRQAVGFLVIHQKSRISYDEITNDLCPILSVQQLYRICTLYCDDNYNTRSVAEEVISSMKVLMPEDTNDEDNNSFLLDDNSSIPFSVDDISSSLQDKNFQDIKPPAELLENPVFQFLQE 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9706948 9719988 - CmoCh06G012880.1 Cmo06g01288 384850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01288 1104 CDD MyosinXI_CBD 707 1073 IPR037975 GO:0007015
Cmo06g01288 1104 Gene3D Kinesin motor domain 156 198 IPR036961 -
Cmo06g01288 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 362 IPR027417 -
Cmo06g01288 1104 Pfam Myosin head (motor domain) 2 252 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo06g01288 1104 ProSiteProfiles Myosin motor domain profile. 1 264 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo06g01288 1104 ProSiteProfiles IQ motif profile. 315 344 IPR000048 GO:0005515
Cmo06g01288 1104 PANTHER MYOSIN 1 372 - -
Cmo06g01288 1104 SMART MYSc_2a 1 265 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo06g01288 1104 SMART DIL_2 925 1032 IPR002710 -
Cmo06g01288 1104 SMART iq_5 266 288 IPR000048 GO:0005515
Cmo06g01288 1104 SMART iq_5 314 336 IPR000048 GO:0005515
Cmo06g01288 1104 SMART iq_5 289 311 IPR000048 GO:0005515
Cmo06g01288 1104 SMART iq_5 337 359 IPR000048 GO:0005515
Cmo06g01288 1104 Coils Coil 624 658 - -
Cmo06g01288 1104 Coils Coil 383 466 - -
Cmo06g01288 1104 Gene3D - 199 264 - -
Cmo06g01288 1104 PANTHER MYOSIN 372 1102 - -
Cmo06g01288 1104 ProSiteProfiles Dilute domain profile. 756 1050 IPR002710 -
Cmo06g01288 1104 ProSiteProfiles IQ motif profile. 338 367 IPR000048 GO:0005515
Cmo06g01288 1104 Coils Coil 582 616 - -
Cmo06g01288 1104 Gene3D - 267 316 - -
Cmo06g01288 1104 Gene3D - 317 369 - -
Cmo06g01288 1104 Gene3D - 1 155 - -
Cmo06g01288 1104 ProSiteProfiles IQ motif profile. 290 319 IPR000048 GO:0005515
Cmo06g01288 1104 PANTHER MYOSIN-7 372 1102 - -
Cmo06g01288 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 318 IPR027417 -
Cmo06g01288 1104 Pfam IQ calmodulin-binding motif 269 287 IPR000048 GO:0005515
Cmo06g01288 1104 Pfam IQ calmodulin-binding motif 293 310 IPR000048 GO:0005515
Cmo06g01288 1104 Pfam IQ calmodulin-binding motif 317 336 IPR000048 GO:0005515
Cmo06g01288 1104 Pfam DIL domain 926 1028 IPR002710 -
Cmo06g01288 1104 PANTHER MYOSIN-7 1 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01288 Cmo-Chr6:9706948 Cmo17g00888 Cmo-Chr17:8068228 0 dispersed
Cmo06g01288 Cmo-Chr6:9706948 Cmo08g00050 Cmo-Chr8:272375 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01288 K10357 - csv:101221506 902.123