Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01289 ATGGTTAATTCGTGTGATGGCGCTTGGGATTCGCTACCTCGACGCTTTGGATCTGTGGCTGATCGAGTTTGTCCCGAAATGGCTGGTCAAGTAAATCTAGCGGTTGGGTGTCTTGTTTGGATTGAGGATCCTGAGGTAGCCTGGATAGATGGGGAAGTAGTGGAAGTTAATGGTCAAGATATCAGAGTACTCTGTTCATCAGGAACTACTGTTGAGGCCAAATCATCAAATGCCTATCCAAAGGATCCTGAATTTCCATCATGTGGTGTGGATGATATGACAAAACTAGCTTATTTACACGAGCCAGGACTGCTACAGAACTTGAAATGTCGTTATGATGTTAATGAAATTTATACCTATACTGGGGGTATACTAATAGCCGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAATGGCATAATGCAACAATATAAAGGGGCGGATTTAGGTGAGCTGAGCCCGCATCCCTTTGCCATTGCAAATTCTGCATATAGACAGATGATTAATGAGGGTATAAGCCAGTCAATTTTAGTTAGCGGGGAAAGTGGAGCTGGTAAAACGGAGAGTACAAAGATGCTTATGCGCTATCTTGCCCATGTTGGAGGGAGAGATGGAGGGAAGTCTGCAACTGGTGAACGCTCTGTAGAGCAGCAAGTACTAGAGTCCAACCCTGTTCTAGAAGCATTTGGCAATGCAAAGACTGTTAGAAACAATAATTCCAGTCGGTTTGGTAAATTTGTGGAGATCCAATTTGACCGAAGTTGGAGAATTTCTGGAGCTGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCTGAGAGGAATTATCATTGCTTTTATATGCTTTGTGCATCAACAGAGGAAGTTGAAAAGTATAAGTTAGGGAATCCAAGAACATTCCATTATCTTAATCAATCTAATTGCTATGAACTTGATGGACTGGACGATTCCAAGGAATATACTTCTACTAGAGAAGCTATGGATGTCGTTGGAATAAGTACAGCTGAGCAGGATGCTATATTTCGAGTGGTAGCTGCAGTACTTCATTTGGGCAATGTTGAATTTGCAAAGGGGAAGGATGCGGATTCCTCTGAACCTAAGGATGACAAAGCTCGGTTCCATCTCAAAATGGCAGCAGAACTATTCATGTGTGATGAGAAGGCTCTTGAAGATTCAATGTGTACTCGTGTGATAGTTACACGTGATGAAACCATAACTAAATGTCTCGATACAGTATCTGCAACTCTTAGTAGGGATGCTTTGGCAAAAATCGTTTTGTGTTTCATTCTTAAATTACTTTTTAATTTAAATTTGTCATTGTTGTTTCTATCATGGACTCTTTTTAAACATTTCCTTCGTGGACTCAGGATTGTTGATAAGATTAATAACTCAATTGGCCAAGATCGTGATTCAAAACACTTAATCGGGGTTCTGGATATCTATGGATTCGAGAGTTTCAAGACAAACAGGTGCTTAACCGGAATTAGCTTTAAATTGGTATCGTGGGAAGGGAGAATGGGAATCATTAAAGGATGGAATGATTTGAAGATGTAA 1578 40.24 MVNSCDGAWDSLPRRFGSVADRVCPEMAGQVNLAVGCLVWIEDPEVAWIDGEVVEVNGQDIRVLCSSGTTVEAKSSNAYPKDPEFPSCGVDDMTKLAYLHEPGLLQNLKCRYDVNEIYTYTGGILIAVNPFRRLPHLYDNGIMQQYKGADLGELSPHPFAIANSAYRQMINEGISQSILVSGESGAGKTESTKMLMRYLAHVGGRDGGKSATGERSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDRSWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCASTEEVEKYKLGNPRTFHYLNQSNCYELDGLDDSKEYTSTREAMDVVGISTAEQDAIFRVVAAVLHLGNVEFAKGKDADSSEPKDDKARFHLKMAAELFMCDEKALEDSMCTRVIVTRDETITKCLDTVSATLSRDALAKIVLCFILKLLFNLNLSLLFLSWTLFKHFLRGLRIVDKINNSIGQDRDSKHLIGVLDIYGFESFKTNRCLTGISFKLVSWEGRMGIIKGWNDLKM 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9724770 9729766 - CmoCh06G012890.1 Cmo06g01289 384851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01289 525 Gene3D Kinesin motor domain 476 491 IPR036961 -
Cmo06g01289 525 Gene3D - 282 339 - -
Cmo06g01289 525 Gene3D Myosin VI head, motor domain, U50 subdomain 341 433 - -
Cmo06g01289 525 PRINTS Myosin heavy chain signature 226 253 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo06g01289 525 PRINTS Myosin heavy chain signature 118 137 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo06g01289 525 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo06g01289 525 PRINTS Myosin heavy chain signature 175 200 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo06g01289 525 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 34 83 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo06g01289 525 Gene3D Myosin VI head, motor domain, U50 subdomain 465 475 - -
Cmo06g01289 525 Gene3D Kinesin motor domain 91 281 IPR036961 -
Cmo06g01289 525 PANTHER MYOSIN-14 23 497 - -
Cmo06g01289 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 497 IPR027417 -
Cmo06g01289 525 Pfam Myosin head (motor domain) 90 497 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo06g01289 525 Pfam Myosin N-terminal SH3-like domain 38 76 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo06g01289 525 PANTHER MYOSIN 23 497 - -
Cmo06g01289 525 SMART MYSc_2a 82 524 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo06g01289 525 ProSiteProfiles Myosin motor domain profile. 88 525 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01289 Cmo-Chr6:9724770 Cmo08g00050 Cmo-Chr8:272375 0 dispersed
Cmo06g01289 Cmo-Chr6:9724770 Cmo17g01320 Cmo-Chr17:10337844 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01289 K10357 - cmax:111474800 865.914