Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01292 ATGGATTCTCCTATTCCTTTTCTGGACCTCAATCTTCTGCCCGACCCATCTACTGCTGTAATGGCGGCCGCAACTTCCCCTAAATCAGCCACAATCAACTCTTCTGTCAATAAATTTGTTGAAACTGGCAGGTTGTTGACCCCTAAATTGGAGCCGAAGCTCGAGCCGTTCGACGATGTTTATCAGACTCCGGTGACCCAACAATCCCAACCAGTTCAGGAACGTTTCTTGTCGAGCACTTCTTCGAATTTTTTCTCTAACTCGGATTTTGCTCGTACACCCTTTTCTGACCAGAATCATCACCTGTTTTCTCAGTCTTCGTCCATTTCTTCTGATAAGGACAATGTTTATTCCGAATTTTACCGCATTTCTCAGCTGTTTAGGACTGCTTTTGGTAAAGGATCTCAGAGCAATGGGGATGTTGAAGTTATGGATCCTGATTCTCGGGCAATTGTCCCGGTTCCTGATGAGAATCATGTGTCTACTATGGTCGTTTCTAAGAGGAGGTATGATAAAAGATCTTCTGAACTTGTGAGAGTGACTGATCTTGGGGTTGATGACCAGAGGTATTTCCGAGATGTGGTGAGACGAACCAGGATGGTTTTTGATTCGTTGCGTGTGTTATCGATGCCGGAGGAGGAGAAGAGTTCGGGACTAATCCGGCGACTTCGGAGTGATTTGAGAGCTTCGTCCTTGATGAGAGAGCGCGGTCTGTGGCTGAATCGCGACAAACGGATTGTTGGTTCGATTCCTGGAGTGCACATTGGCGATCTGTTCTTCTTTAGGATGGAATTGTGTGTTGTTGGATTGCACGGTCAGGCTCAAGCTGGAATTGACTATGTCCCTGCGAGTCAGAGCTCCAACGGCGAGCCAATTGCCACTAGCGTGATTGTTTCTGGTGGATATGAGGACGATGAGGATTCTGGAGACACGATAATCTATACGGGTCATGGTGGGCAAGACAAATTTTCAAAACAATGTATGCACCAGAAGCTTGAAGGTGGGAACCTTGCACTGGAGAGAAGCATGCACTACGGGATTGAAGTGAGGGTAATACGAGGTATGAAGTACGCCGGCGGTGTAACAAGTAAGATTTATGTATACGATGGTCTATATAGAATTCTCGAATGTTGGTTTGATGTGGGGAAGTCTGGTTTTGGTGTTTACAAGTTTAAGCTTCTAAGGATTGATGGTCAAGCCGAAATGGGTAGCTCCATTTTGAAATTTGCAGAGAATCTCAGGTCTAAACCATTGTCTTTGAGGCCTTCTGGTTATCTCAGTCTCGATATTTCAATGAAGAAGGAGGCTGTTCCAGTTCTCCTCTTCAATGATATTGACAACGATCAAGAACCATTGTATTATGAGTATCTTGTTGGGACTGTGTTTCCGCCGTTCGCCTTTCACCAATCAGGAAGCGGTACTGGATGCAGTTGTGTTTCAGGTTGTGTTCATGATTGCTTTTGTGCTATGAAAAATGGTGGGGAGTTTGCTTATGATCAAAATGGATGTCTAGTGAGAGGAAAACCGATAATTTTCGAATGCGGACCCTTCTGTCAGTGCCCCCCTCAATGTCGAAATCGTGTTTCACAGAAGGGATTGAAGCACAGACTTGAAGTGTTTAGGTCCAGGGAAACAGGTTGGGGCGTTAGATCCTTGGACCTGATACCTGCTGGTGCTTTTATATGTGAATATGCAGGAGTTGTCCTCACGAGAGAACAAGCTCAAGTTCTTTCTATGAATGGTGATACATTAATATATCCAAATCGTTTTTCGGATAGATGGGCAGAATGGGGCGATCTATCTCAAATATATTCTAATTATGTGCGGCCATCATACCCCTCTGTTCCTCCTCTGGATTTCGCAATGGATGTGTCCAGAATGAGAAATGTTGCTTGTTATATAAGCCATAGTACATCGCCAAACGTGTTGGTCCAGTTCGTGTTATATGATCATAATAATTTGATGTTTCCTCACCTTATGTTGTTTGCAATGGAGAATATCCCTCCTCTGAGGGAACTTAGCATTGACTATGGTGTGGCTGATGAATGGTCAGGGAAACTTGCCATCTGTAACTAA 2076 44.41 MDSPIPFLDLNLLPDPSTAVMAAATSPKSATINSSVNKFVETGRLLTPKLEPKLEPFDDVYQTPVTQQSQPVQERFLSSTSSNFFSNSDFARTPFSDQNHHLFSQSSSISSDKDNVYSEFYRISQLFRTAFGKGSQSNGDVEVMDPDSRAIVPVPDENHVSTMVVSKRRYDKRSSELVRVTDLGVDDQRYFRDVVRRTRMVFDSLRVLSMPEEEKSSGLIRRLRSDLRASSLMRERGLWLNRDKRIVGSIPGVHIGDLFFFRMELCVVGLHGQAQAGIDYVPASQSSNGEPIATSVIVSGGYEDDEDSGDTIIYTGHGGQDKFSKQCMHQKLEGGNLALERSMHYGIEVRVIRGMKYAGGVTSKIYVYDGLYRILECWFDVGKSGFGVYKFKLLRIDGQAEMGSSILKFAENLRSKPLSLRPSGYLSLDISMKKEAVPVLLFNDIDNDQEPLYYEYLVGTVFPPFAFHQSGSGTGCSCVSGCVHDCFCAMKNGGEFAYDQNGCLVRGKPIIFECGPFCQCPPQCRNRVSQKGLKHRLEVFRSRETGWGVRSLDLIPAGAFICEYAGVVLTREQAQVLSMNGDTLIYPNRFSDRWAEWGDLSQIYSNYVRPSYPSVPPLDFAMDVSRMRNVACYISHSTSPNVLVQFVLYDHNNLMFPHLMLFAMENIPPLRELSIDYGVADEWSGKLAICN 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9748567 9750642 + CmoCh06G012920.1 Cmo06g01292 384854

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01292 691 Gene3D SET domain 404 691 IPR046341 -
Cmo06g01292 691 Pfam Pre-SET motif 430 527 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cmo06g01292 691 Gene3D - 245 403 IPR036987 -
Cmo06g01292 691 SMART set_7 535 684 IPR001214 GO:0005515
Cmo06g01292 691 Pfam SAD/SRA domain 247 399 IPR003105 -
Cmo06g01292 691 SUPERFAMILY PUA domain-like 229 408 IPR015947 -
Cmo06g01292 691 SMART G9a_1 243 399 IPR003105 -
Cmo06g01292 691 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 92 691 IPR025794 GO:0016571
Cmo06g01292 691 SUPERFAMILY SET domain 419 690 IPR046341 -
Cmo06g01292 691 SMART preset_2 427 519 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cmo06g01292 691 ProSiteProfiles Pre-SET domain profile. 474 532 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cmo06g01292 691 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 71 689 - -
Cmo06g01292 691 Pfam SET domain 546 678 IPR001214 GO:0005515
Cmo06g01292 691 ProSiteProfiles SET domain profile. 535 678 IPR001214 GO:0005515
Cmo06g01292 691 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH9-LIKE 71 689 - -
Cmo06g01292 691 ProSiteProfiles YDG domain profile. 248 395 IPR003105 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01292 K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT [EC:2.1.1.355] - csv:101222210 1243.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01292 Cmo14g01895 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00214 Cmo-Chr3:3428685 Cmo06g01292 Cmo-Chr6:9748567 2.47E-122 dispersed
Cmo04g02065 Cmo-Chr4:11768003 Cmo06g01292 Cmo-Chr6:9748567 8.82E-22 dispersed
Cmo06g01292 Cmo-Chr6:9748567 Cmo07g01178 Cmo-Chr7:6330022 8.13E-121 dispersed
Cmo11g00004 Cmo-Chr11:16697 Cmo06g01292 Cmo-Chr6:9748567 8.25E-10 dispersed
Cmo14g01895 Cmo-Chr14:14151102 Cmo06g01292 Cmo-Chr6:9748567 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g800 . . . . . Bpe14g01288 . . . . Cma06g01287 Cma14g01850 Car06g01105 Car14g01658 . . Cpe03g01550 . . . . . . . . . . . . . . Cone14ag0189 . Cone7ag0355 Cone4ag0368 Lsi05g01779 . . Cme06g00442 Blo02g00682 . . Bda13g00032 . . Bma02g00745 . . Cmo06g01292 Cmo14g01895 . . . . . . . . . . . . . Cla05g00401 Cam05g0437 Cec05g0443 Cco05g0442 Clacu05g0432 Cmu05g0413 Cre05g0474 . Csa03g01158 Chy06g00421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007214 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10012 PF02182 SAD_SRA 7.10E-49 CL0178 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01292 Cmo_Chr06 FPKM 0.0 0.0 0.682947 0.41063 2.101809 1.817461 1.639571 1.228833 1.234753 0.848331