Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01305 ATGAACTGCTCTATCTCCGGCGAGATTCCGGAAGAGCCAGTTGTCTCTAAGAATTCTGGATTACTCTTCGAGAAGCGGTTAATCGAGAGGCACATTTTAGACTATGGGAAATGCCCTGTTACAGGCGAACCTCTTTCCATTGATGACATCGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCACTGGAGCAACAGTTGCATACAGCCAGACAGGAACTTAGTCATGCCTTATATCAGCATGATGCAGCCTGTCGTGTAATTGCAAGACTTAAAAAGGAACGGGATGAAGCTAGGTCATTACTTGCTCAGGCAGAGAGGCAGATGCCCTTGTCATCAACTTCAATATCATCCAATGCTGCTGTCAATGTTAATGGCAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTTCCCTTTCACAACAAAGGAAGAAGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTTTAGAGAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAACAAACCAGGGATTATATCTCTTGACATCAATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTGAGTGGTCATTCAAAGAAGGTAACAAGTGTCAAATTTGTCACCCGAGATGATTTATTCTTGACTGGTTCGGCTGACAAGACTGTCCGTGTATGGCAACCATCTGATGACGGGAACTATAATTGTAGGCACATTTTAAAGGATCACACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAACAACTTCTTTGTTACTGCCTCCCTTGATAACACATGGTGTTTTTATGACCTTGCTTCAGGATTATGCCTAACCCAGGTTGCAGAGGATTCAGGAACGGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGACTCATCCTTGGAACCGGCACGTCAGAGGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCTAGATTTGATGGACACGTTGGGGCAGTGACAGCCATATCATTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCCGTGGAATTTGACCATAGTGGATCTTACCTTGCAATTGCTGGCTCAGATATAAGAGTTTACCAAGTTGCTAGTGTGAAGTCTGAATGGAATTGCATCAAAACTATTCCAGATTTATCTGGCACAGGTAAAGCAACCTGCCTAAAATTCGGAACGGATGCAAAATACTTGGCAGTCGGATCCATGGATCGAAATCTTCGGATTTTTGGTGTGCCTGGGGAAGACGGCCCGATGGAGACATAA 1566 44.19 MNCSISGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNASLSQQRKKRQIPPTLVPVEALESYTQISSHPLHKTNKPGIISLDINHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVTRDDLFLTGSADKTVRVWQPSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYDLASGLCLTQVAEDSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGTDAKYLAVGSMDRNLRIFGVPGEDGPMET 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9787333 9795035 - CmoCh06G013050.1 Cmo06g01305 384867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01305 521 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Cmo06g01305 521 Gene3D - 199 512 IPR015943 GO:0005515
Cmo06g01305 521 SUPERFAMILY RING/U-box 1 53 - -
Cmo06g01305 521 SMART WD40_4 470 511 IPR001680 GO:0005515
Cmo06g01305 521 SMART WD40_4 339 380 IPR001680 GO:0005515
Cmo06g01305 521 SMART WD40_4 207 249 IPR001680 GO:0005515
Cmo06g01305 521 SMART WD40_4 383 421 IPR001680 GO:0005515
Cmo06g01305 521 SMART WD40_4 252 291 IPR001680 GO:0005515
Cmo06g01305 521 SMART WD40_4 424 463 IPR001680 GO:0005515
Cmo06g01305 521 SMART WD40_4 297 336 IPR001680 GO:0005515
Cmo06g01305 521 SUPERFAMILY WD40 repeat-like 220 510 IPR036322 GO:0005515
Cmo06g01305 521 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Cmo06g01305 521 CDD WD40 223 510 - -
Cmo06g01305 521 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Cmo06g01305 521 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 520 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Cmo06g01305 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Cmo06g01305 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515
Cmo06g01305 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Cmo06g01305 521 Pfam WD domain, G-beta repeat 299 336 IPR001680 GO:0005515
Cmo06g01305 521 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515
Cmo06g01305 521 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515
Cmo06g01305 521 Pfam WD domain, G-beta repeat 473 510 IPR001680 GO:0005515
Cmo06g01305 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Cmo06g01305 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Cmo06g01305 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 345 IPR001680 GO:0005515
Cmo06g01305 521 CDD RING-Ubox_PRP19 3 54 - -
Cmo06g01305 521 Coils Coil 113 133 - -
Cmo06g01305 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01305 Cmo14g01882 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01305 Cmo-Chr6:9787333 Cmo18g00844 Cmo-Chr18:9798785 2.49E-11 dispersed
Cmo14g01882 Cmo-Chr14:14104720 Cmo06g01305 Cmo-Chr6:9787333 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01305 K10599 - csv:101204424 994.571