Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01314 ATGAGAGCAAAGGCCTGGAGGAATGAGCAAATTTTACGCCTCAAGAGTAAATTTAGCAAGATGATAAACTGTATTCGTTCAGGGGATCAATTAAAAGTGGATGAAATGATGCATTCATCAGATTCTCTGGCAACTCGAGACTATTCAGCCAGTGGTTTTTCATCACGTACTGGGGAGGTGGAACCGAAGGTGGATAATGCCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGTTATCTGAATTATGAGGAAGCACGCGCTTTACTTGGAAGGCTCGAGTACCAAAAGGGTAACATAGAAGCTGCTCTTCATGTTTTTGAAGGAATAGACATTGTTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATATGAACAAAATAGACGGCAATCACAAAGTGATGTTGTGCCTACTATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCAGCAAAAGCTTGCAAACTACTTTTAGACACCGTTGAATCTGCATTACCAGAAGGCTTACCTGAAAATTTCGCTAGTGATTGTAAATTGCAAGGGACGCTAACAAAGGCTGTTGAATTGCTTCCAGAATTGTGGAAATCTGCCGGGTCTCCAGAAGAATCCATCTTGTCATACAGGCGTGCCCTTATTTACCAATGGAATCTAGAAATGGAAACTAGAGCAAAGATAGAAAAAGAATTTGCAATTTTCCTTCTATATAGTGGTTGTGATGCGAGTCCTCCCAATCTCCGTTTGCAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGTTGGGAAAGTATATACATGGATTGGTTGTATGGGACCCATCAATAACAGAGCATCTCTCGTTTGCACTGTCTATTGTTGGGGAATTTGGAGCTCTAGCTAATGAGGTTGAACAATTGCCTCCAGGAACTATAGGAAGGAAAGAGAAGTACTGGACACTAGCTCTTTGTTACTACGGGGAAGGTAAAAGCTTAGTTGCGTTGAACCTTTTGAAGAACTTCTTGAATAACAAAGATAATGTAGACTGCTTACTGGAATTGTTGTTAGCTTCAAAGCTCTGTGGAGAGAATTTGGTTTGTCTCGATGAGGGGGTGACTTACATATTGAGAGTGCTTTCGGAATTGGGTGGTAGATGCATCCAGATGGTTTCTATTGCTAATTGCTTACATGGTGTATTACTGTCAGCCATATCCAAATCAATTGCTTCTGATTCTCTTAAAACTTTGAAGCAATCTGAGGCACTCAAGGCACTACAAACCGCCGAGCAACTGATGAAACAAAGGGATCCATTCATTGTGTATCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATAATGCTCTATACTACGCAAAACAGCTAGTGAAACTCGAGGCTGGGTCTAGTGTGAAGTCCTACATCCTCTTGGCCAGAATATTGTCTTCCCAGAAACGGTTTGGGGATGCAGAGACTGTAATCAACGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGCGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCACAGGGCCAGTTAAAGAGCAGTATAGAAACATATACTCATCTTCTTGCTATAATTCGAGTCCGGACTAAAAGTAGTGGAGTTGGAAAGATGCTTTCAAAGGATGTGAGAACATCTGACAGAAGTCTGGAAATAGAAACATGGAATGATTTGGCCAATATTTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATCTGCCTATCAAAATTGCAGGCAATCAATCCATATTCTGCTTCTAAATGGTATTCCACAGGTTTACTGTATGAGTCTAAGGGTCTCCCACGAGATGCTTTGCAAGCATACAACAAAGGATTAGACATCGATCCTAACCATGTTCCCAGCATGATATCAACTGCCCGTCTTCTCCAACAACTGGGCGGCAGGCAGTCATTTCCTGTGGTAAGAAGCTTGCTAACCGACGCCCTTCGACTTGATCGAGAAAACCCATCTGCATGGTACAATCTCGGGTTGCTATACAAAGCTGATGTCGGGGCATCCGTGCTGGAGGCTGCCGAATGTTTTGAGGCTGCAACTCTGCTTGAAGAGTTTACTCAGATCTTCCATTTGCTTGCTGCATTTTCTTCTTCGGGATTAGGAACAATAGTAATAGATGATTGGCACAAAGTACACACAACAGTTGAGCTCCTTCTCAACGGCAAGGGCAAGGTGCAGAAAACTTTTGAGCAACGGGTTGAAGCGCAGACGGATATGGGAGTGGTTGGAAGAGATTTTGATGCCATCAATTCAGAAGTGAGAAACCCAAGCTCGGAATTGGGTTTAGTTCTGAAGTGA 2418 42.56 MRAKAWRNEQILRLKSKFSKMINCIRSGDQLKVDEMMHSSDSLATRDYSASGFSSRTGEVEPKVDNANIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIVAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKACKLLLDTVESALPEGLPENFASDCKLQGTLTKAVELLPELWKSAGSPEESILSYRRALIYQWNLEMETRAKIEKEFAIFLLYSGCDASPPNLRLQMESSFVPRNNMEEAILLLMDLLGKYIHGLVVWDPSITEHLSFALSIVGEFGALANEVEQLPPGTIGRKEKYWTLALCYYGEGKSLVALNLLKNFLNNKDNVDCLLELLLASKLCGENLVCLDEGVTYILRVLSELGGRCIQMVSIANCLHGVLLSAISKSIASDSLKTLKQSEALKALQTAEQLMKQRDPFIVYHLCLEYAEQRKLDNALYYAKQLVKLEAGSSVKSYILLARILSSQKRFGDAETVINAALEQTGKWEQGELLRTKAKLQIAQGQLKSSIETYTHLLAIIRVRTKSSGVGKMLSKDVRTSDRSLEIETWNDLANIYTSLSQWRDAEICLSKLQAINPYSASKWYSTGLLYESKGLPRDALQAYNKGLDIDPNHVPSMISTARLLQQLGGRQSFPVVRSLLTDALRLDRENPSAWYNLGLLYKADVGASVLEAAECFEAATLLEEFTQIFHLLAAFSSSGLGTIVIDDWHKVHTTVELLLNGKGKVQKTFEQRVEAQTDMGVVGRDFDAINSEVRNPSSELGLVLK 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9826153 9832223 - CmoCh06G013140.1 Cmo06g01314 384876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01314 805 PANTHER OS10G0471400 PROTEIN 14 728 - -
Cmo06g01314 805 PANTHER PROTEIN NPG1 14 728 IPR043376 -
Cmo06g01314 805 Gene3D Tetratricopeptide repeat domain 83 569 IPR011990 GO:0005515
Cmo06g01314 805 Pfam Tetratricopeptide repeat 468 523 - -
Cmo06g01314 805 Gene3D Tetratricopeptide repeat domain 571 736 IPR011990 GO:0005515
Cmo06g01314 805 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Cmo06g01314 805 SMART tpr_5 620 653 IPR019734 GO:0005515
Cmo06g01314 805 SMART tpr_5 586 619 IPR019734 GO:0005515
Cmo06g01314 805 SMART tpr_5 494 527 IPR019734 GO:0005515
Cmo06g01314 805 SMART tpr_5 530 563 IPR019734 GO:0005515
Cmo06g01314 805 SMART tpr_5 152 185 IPR019734 GO:0005515
Cmo06g01314 805 SMART tpr_5 691 726 IPR019734 GO:0005515
Cmo06g01314 805 Pfam Tetratricopeptide repeat 623 653 IPR019734 GO:0005515
Cmo06g01314 805 SUPERFAMILY TPR-like 439 559 IPR011990 GO:0005515
Cmo06g01314 805 SUPERFAMILY TPR-like 531 702 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01314 Cmo14g01869 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01314 Cmo-Chr6:9826153 Cmo09g00716 Cmo-Chr9:3547046 0 dispersed
Cmo14g01869 Cmo-Chr14:14051061 Cmo06g01314 Cmo-Chr6:9826153 0 wgd
Cmo19g00117 Cmo-Chr19:686724 Cmo06g01314 Cmo-Chr6:9826153 0 wgd
Cmo02g01776 Cmo-Chr2:10125829 Cmo06g01314 Cmo-Chr6:9826153 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01314 K21843 - csv:101206105 1212.98