Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01321 ATGGATGGAACTGTTTTTGCCCCTGCCTTGGAAGGGATTCAGCATGTCAAATCTGAAGCAGGGGAGATTTTGACCAAGCCTTTCTTGGAAGTGTGCAAACATATTTTGCCTGTTATAGATAAGTTTGGAGCTTCTATGGCACTTGTTAAAACTGACATAGGAGGCAACATCTCGAGATTGGACGCCAAGTATTGTTCCAACCCACCTGCATTCAAGTACTTGTATCACTTGGTGAAGCCTGAGATTGAAACTAATACTGCAAAAGGATCATCCAGTTGCACAAATGGTCTTCTTTGGTTGACAAGAGCATTGGATTTCTTGGTACAACTGTTTCGCAACTTACTGGAGCATCAGGATTGGACAATGACCCGTGCTTGTACAGAAGCATATGGCAGAACCTTGAAAAAGTGGCATGGCTGGCTGGCCAGTTCAAGTTTCTCTGTCGCCATGAAGCTTGCTCCCGATCGTAAGAAGTTTATGGATGTTCTATCAGGCAATGGCAATGTTGAAGCTGACATTGAGAAATTTTGTACAAAATTTTCACCTCTCCTCGCAGAGAATCACAAATTTCTGCTAATTGGAACAATGGGCACCTCTGTCAAGGGCAACTCTGTAAAGGGCCTCTTAAAAGGACTAAGATACATTTCACAGATTTTCGATGAAAAGGAACAGGAAATGCAGATTGGGCTTCCCACTGACGTTAAGCATGTTGCTCATATTGGATGGGATGGTCCATCTGGTAATCAAAATAATCCTGGCTGGATGAACGAGTTCAAATCCTCGCCACAAGACTCGGGGGATTTGGTGAATACTAGTGGGGAACTCCCCATCAAAGAGTCTGGAGAGATAGATGTGCAAAAGGCAAATCGATCTCGAAAGTCGAAATCGCAAACATCATCAGACACATCTTTAGACTCTTCTTCTGCTCGGCGACACTCTGAGAAAGGTTCTAGGCGACAACGCTCATCCTGCCCTTCAGGCGAATCTGCTGCAGAAGGTAGTAATCGAAGCTCACGACGTCATCGTAGTTCGAATCAAGGGGGTTCATCAAGCTCAGAAAATCCTGCCCCAAAACACTCACATCGGAGGAAATCTAAGGGGTCATCTGACGGGGGTGAATCAACAAAATCCTCTAGATCAAGGGAGAATAACTCTTTAACAGACATACCAACCCCAGCGTTGGAAGCAGTTGATGAAGAACAGGGGTGA 1209 44.83 MDGTVFAPALEGIQHVKSEAGEILTKPFLEVCKHILPVIDKFGASMALVKTDIGGNISRLDAKYCSNPPAFKYLYHLVKPEIETNTAKGSSSCTNGLLWLTRALDFLVQLFRNLLEHQDWTMTRACTEAYGRTLKKWHGWLASSSFSVAMKLAPDRKKFMDVLSGNGNVEADIEKFCTKFSPLLAENHKFLLIGTMGTSVKGNSVKGLLKGLRYISQIFDEKEQEMQIGLPTDVKHVAHIGWDGPSGNQNNPGWMNEFKSSPQDSGDLVNTSGELPIKESGEIDVQKANRSRKSKSQTSSDTSLDSSSARRHSEKGSRRQRSSCPSGESAAEGSNRSSRRHRSSNQGGSSSSENPAPKHSHRRKSKGSSDGGESTKSSRSRENNSLTDIPTPALEAVDEEQG 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9867219 9873560 - CmoCh06G013210.1 Cmo06g01321 384883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01321 402 Pfam Glycolipid transfer protein (GLTP) 23 163 IPR014830 GO:0005737|GO:0120009|GO:0120013
Cmo06g01321 402 MobiDBLite consensus disorder prediction 371 390 - -
Cmo06g01321 402 SUPERFAMILY Glycolipid transfer protein, GLTP 14 192 IPR036497 -
Cmo06g01321 402 MobiDBLite consensus disorder prediction 307 321 - -
Cmo06g01321 402 PANTHER GLYCOLIPID TRANSFER PROTEIN-RELATED 1 193 - -
Cmo06g01321 402 MobiDBLite consensus disorder prediction 340 355 - -
Cmo06g01321 402 MobiDBLite consensus disorder prediction 292 306 - -
Cmo06g01321 402 MobiDBLite consensus disorder prediction 240 402 - -
Cmo06g01321 402 Gene3D Glycolipid transfer protein 4 216 IPR036497 -
Cmo06g01321 402 PANTHER GLYCOLIPID TRANSFER PROTEIN (GLTP) FAMILY PROTEIN 1 193 - -
Cmo06g01321 402 CDD CRIB 226 261 - -
Cmo06g01321 402 SMART PBD_5 228 265 IPR000095 -
Cmo06g01321 402 MobiDBLite consensus disorder prediction 244 270 - -
Cmo06g01321 402 Pfam P21-Rho-binding domain 227 267 IPR000095 -
Cmo06g01321 402 Gene3D CRIB domain 221 268 IPR036936 -
Cmo06g01321 402 ProSiteProfiles CRIB domain profile. 228 241 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01321 - - - csv:101206827 347.051
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01321 Cmo14g01862 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01321 Cmo-Chr6:9867219 Cmo14g01862 Cmo-Chr14:14023227 7.32E-76 dispersed
Cmo17g01338 Cmo-Chr17:10473897 Cmo06g01321 Cmo-Chr6:9867219 5.79E-17 dispersed
Cmo14g01861 Cmo-Chr14:14019754 Cmo06g01321 Cmo-Chr6:9867219 3.80E-18 wgd
Cmo19g00114 Cmo-Chr19:671261 Cmo06g01321 Cmo-Chr6:9867219 2.07E-21 wgd
Cmo02g01778 Cmo-Chr2:10134295 Cmo06g01321 Cmo-Chr6:9867219 1.55E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004412 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01321 Cmo_Chr06 FPKM 0.567647 0.860961 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0