Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01333 ATGATCATTTTCCCGGCAGCCGTGTACGACGCTGCGTGCAGAAAATGGAAACGCGCCACCGTCGTCATGATCGGCGGTGGAAGAGTGGTTCAGAAGTTGTATGGTGTATGGGGTCCGCGTGTACCAACTCAGAACCCCACTTTACAAAGCTTCTTCATTACCCTTCGTTCTTTAATTCCTTTTTCTGCATTAGGGTTTGCTCCGAATTCCACTCAATCTTCTTCCAATCGAATATATTCTTCCTTTTTCCTCATCGATCTGCCACCATTCTTTTCATCTCTCCAAGTGAGAAATCAAATGGGCAAAAGGAAAAAGAAACATAAAGCCGTATTTTTCAAATCAGACAAGGAGCGGAACCAGAAACAGAAGATTGAAGAAGAGGAACCACACCATAGGATGGAATCTGCTACCCTTAATAGAATAATTAGCAGGTTGCTTGAAACCGGGAGCAAATCGGGGAAGCAGGCGCCGCTTTCTGAGACGGAAATTACTCAGTTATGCATGGTCTCCAGGAATATCTTCTTAAGGCAACCAAATCTTTTGGAAATTGAAGCTCCTGTCTATATCTGCGGAGACATCCATGGTCAGTATACTGATCTTCTAAGGCTTCTTGAATATGGTGGATTACCTCCTCATTCGAACTACTTGTTCTTGGGGGACTATGTAGATCGTGGAAAGCAGAGCTTAGAAACCATGTGCCTTCTCCTTGCATATAAAATAAAATATCCTGAAAACTTCTTTCTTTTGAGGGGCAACCATGAATGTGCATCGGTCAACCGTATCTACGGTTTTTACGACGAATGTAAACGGAGATTCAACGTCAAACTCTGGAAGATATTCACAGACTGTTTCAATTGCTTGCCTATGTCTGCTCTGATTGATGAAAGGATACTCTGTATGCATGGTGGACTGTCTCCTCATCTTGACAAGTTGGATCAGATTAGGAACTTAAAGCGGCCTACTGATGTTCCCGACAACGGGTTAGTTTGTGATCTTCTCTGGTCTGATCCAAGTCAAGAAACACGAGGCTGGGGACCGAATGAACGAGGGGTTTCTTACACATTCGGAGTGGATCGAGTTACAGAGTTTCTTCGAAAGCATGATCTTGATTTGATTTGTAGAGCTCACCAGGTCGTGGAGGACGGGTACGAGTTTTTTGCAAATCGAAAACTTGTAACACTATTTTCTGCTCCAAATTACTGTGGAGAGTTCGATAATGCTGGTGCAATGATGCACGTGGATGAAAACTTAATGTGTTCGTTCCAAATACTAAAACCAGCTGATAAGAAGGCGAGGTTTGGCTTCGGCAGCATGTCGTTGGGACGTCGTTTCTGGGAGGAATCGGATGAAACTCGTACCATGTTCTTACCAAACTGCGTCATCTGA 1386 43.87 MIIFPAAVYDAACRKWKRATVVMIGGGRVVQKLYGVWGPRVPTQNPTLQSFFITLRSLIPFSALGFAPNSTQSSSNRIYSSFFLIDLPPFFSSLQVRNQMGKRKKKHKAVFFKSDKERNQKQKIEEEEPHHRMESATLNRIISRLLETGSKSGKQAPLSETEITQLCMVSRNIFLRQPNLLEIEAPVYICGDIHGQYTDLLRLLEYGGLPPHSNYLFLGDYVDRGKQSLETMCLLLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVKLWKIFTDCFNCLPMSALIDERILCMHGGLSPHLDKLDQIRNLKRPTDVPDNGLVCDLLWSDPSQETRGWGPNERGVSYTFGVDRVTEFLRKHDLDLICRAHQVVEDGYEFFANRKLVTLFSAPNYCGEFDNAGAMMHVDENLMCSFQILKPADKKARFGFGSMSLGRRFWEESDETRTMFLPNCVI 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9926979 9929743 - CmoCh06G013330.1 Cmo06g01333 384895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01333 461 Pfam Calcineurin-like phosphoesterase 186 378 IPR004843 GO:0016787
Cmo06g01333 461 PRINTS Serine/threonine phosphatase family signature 390 406 IPR006186 GO:0016787
Cmo06g01333 461 PRINTS Serine/threonine phosphatase family signature 215 242 IPR006186 GO:0016787
Cmo06g01333 461 PRINTS Serine/threonine phosphatase family signature 282 308 IPR006186 GO:0016787
Cmo06g01333 461 PRINTS Serine/threonine phosphatase family signature 368 388 IPR006186 GO:0016787
Cmo06g01333 461 PRINTS Serine/threonine phosphatase family signature 311 338 IPR006186 GO:0016787
Cmo06g01333 461 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Cmo06g01333 461 PRINTS Serine/threonine phosphatase family signature 248 272 IPR006186 GO:0016787
Cmo06g01333 461 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 133 443 - -
Cmo06g01333 461 Gene3D - 130 437 IPR029052 -
Cmo06g01333 461 SUPERFAMILY Metallo-dependent phosphatases 153 431 IPR029052 -
Cmo06g01333 461 SMART pp2a_7 158 428 IPR006186 GO:0016787
Cmo06g01333 461 CDD MPP_PP1_PPKL 138 426 - -
Cmo06g01333 461 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 133 443 - -
Cmo06g01333 461 Pfam Serine-threonine protein phosphatase N-terminal domain 138 184 IPR031675 -
Cmo06g01333 461 ProSitePatterns Serine/threonine specific protein phosphatases signature. 249 254 IPR006186 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01333 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - csv:101209828 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01333 Cmo-Chr6:9926979 Cmo11g01002 Cmo-Chr11:5370313 0 dispersed
Cmo06g01333 Cmo-Chr6:9926979 Cmo10g01064 Cmo-Chr10:5656505 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01333 Cmo_Chr06 FPKM 22.256742 19.611839 15.526141 16.411127 15.79499 15.28118 17.003342 11.920725 13.102085 13.535613