Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01334 ATGGATTACTCTGGATTTTTCTCGCCGGCGTCCGATTTCTCATCGGAATCCTCGTTTGATTCGCCGGAATCTTCGTTTATCAATTTGGATCATGATTTTCTTCCCTTTAATGAGAATGATTCCGAGGAAATGCTTCTCTATGAGCTGATCTCGGAGGGGAGGCAGGATTCGTCCGAGAAGGGAATTGGGGCGGTGCGTGTTAAGGAGGAGGAGGTGGATTCCGTCGGCGAAGAGAGCCCAAAGAAGGAGAGATCTTACAGGGGAGTTCGCCGGCGTCCATGGGGGAAATTCGCCGCCGAAATTAGAGATTCCACCAGACGTGGCATAAGGGTATGGTTGGGAACATTCGACAGTGCGGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTGCGATGAGAGGAGCCACGGCGATTCTCAATTTCCCCGTCGACAGAGTTAGGGAATCTCTTAAGGAAATGAACTGCGGCGGCGATGGTTATGGGCTCGCCGAGGACGGCGGGTCGCCGGTGATTGCGTTGAAAAGAAAACACTCAGTGAGAAGGAATGGCATAAGCAAAATGAAGAAAGAGAGAGATGTAAGGATCCAAAACATGGTGGTTTTGGAGGATTTAGGAACAGAGTATTTGGAAGAGCTTCTGGGGTGTTCTCAAAGTGGCAGCCCTTGTTCTTGCTAA 678 50.74 MDYSGFFSPASDFSSESSFDSPESSFINLDHDFLPFNENDSEEMLLYELISEGRQDSSEKGIGAVRVKEEEVDSVGEESPKKERSYRGVRRRPWGKFAAEIRDSTRRGIRVWLGTFDSAEAAALAYDQAAFAMRGATAILNFPVDRVRESLKEMNCGGDGYGLAEDGGSPVIALKRKHSVRRNGISKMKKERDVRIQNMVVLEDLGTEYLEELLGCSQSGSPCSC 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9931260 9931937 - CmoCh06G013340.1 Cmo06g01334 384896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01334 225 MobiDBLite consensus disorder prediction 54 86 - -
Cmo06g01334 225 MobiDBLite consensus disorder prediction 8 24 - -
Cmo06g01334 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 27 216 - -
Cmo06g01334 225 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Cmo06g01334 225 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Cmo06g01334 225 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Cmo06g01334 225 MobiDBLite consensus disorder prediction 1 24 - -
Cmo06g01334 225 MobiDBLite consensus disorder prediction 54 85 - -
Cmo06g01334 225 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Cmo06g01334 225 CDD AP2 86 145 IPR001471 GO:0003700|GO:0006355
Cmo06g01334 225 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Cmo06g01334 225 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Cmo06g01334 225 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Cmo06g01334 225 PANTHER DNA-BINDING DOMAIN 27 216 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01334 Cmo-Chr6:9931260 Cmo08g00292 Cmo-Chr8:1799748 1.35E-45 dispersed
Cmo14g01846 Cmo-Chr14:13963597 Cmo06g01334 Cmo-Chr6:9931260 9.97E-101 wgd
Cmo19g00097 Cmo-Chr19:548824 Cmo06g01334 Cmo-Chr6:9931260 2.17E-53 wgd
Cmo02g01795 Cmo-Chr2:10198332 Cmo06g01334 Cmo-Chr6:9931260 1.12E-51 wgd
Cmo06g01334 Cmo-Chr6:9931260 Cmo08g01062 Cmo-Chr8:6866695 6.25E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10014 PF00847 AP2 9.60E-15 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01334 K14516 - csv:101210326 331.643