Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g01334 | ATGGATTACTCTGGATTTTTCTCGCCGGCGTCCGATTTCTCATCGGAATCCTCGTTTGATTCGCCGGAATCTTCGTTTATCAATTTGGATCATGATTTTCTTCCCTTTAATGAGAATGATTCCGAGGAAATGCTTCTCTATGAGCTGATCTCGGAGGGGAGGCAGGATTCGTCCGAGAAGGGAATTGGGGCGGTGCGTGTTAAGGAGGAGGAGGTGGATTCCGTCGGCGAAGAGAGCCCAAAGAAGGAGAGATCTTACAGGGGAGTTCGCCGGCGTCCATGGGGGAAATTCGCCGCCGAAATTAGAGATTCCACCAGACGTGGCATAAGGGTATGGTTGGGAACATTCGACAGTGCGGAAGCCGCCGCTTTGGCCTACGATCAAGCCGCCTTTGCGATGAGAGGAGCCACGGCGATTCTCAATTTCCCCGTCGACAGAGTTAGGGAATCTCTTAAGGAAATGAACTGCGGCGGCGATGGTTATGGGCTCGCCGAGGACGGCGGGTCGCCGGTGATTGCGTTGAAAAGAAAACACTCAGTGAGAAGGAATGGCATAAGCAAAATGAAGAAAGAGAGAGATGTAAGGATCCAAAACATGGTGGTTTTGGAGGATTTAGGAACAGAGTATTTGGAAGAGCTTCTGGGGTGTTCTCAAAGTGGCAGCCCTTGTTCTTGCTAA | 678 | 50.74 | MDYSGFFSPASDFSSESSFDSPESSFINLDHDFLPFNENDSEEMLLYELISEGRQDSSEKGIGAVRVKEEEVDSVGEESPKKERSYRGVRRRPWGKFAAEIRDSTRRGIRVWLGTFDSAEAAALAYDQAAFAMRGATAILNFPVDRVRESLKEMNCGGDGYGLAEDGGSPVIALKRKHSVRRNGISKMKKERDVRIQNMVVLEDLGTEYLEELLGCSQSGSPCSC | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9931260 | 9931937 | - | CmoCh06G013340.1 | Cmo06g01334 | 384896 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g01334 | 225 | MobiDBLite | consensus disorder prediction | 54 | 86 | - | - | |
Cmo06g01334 | 225 | MobiDBLite | consensus disorder prediction | 8 | 24 | - | - | |
Cmo06g01334 | 225 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 27 | 216 | - | - | |
Cmo06g01334 | 225 | SMART | rav1_2 | 85 | 149 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g01334 | 225 | PRINTS | Ethylene responsive element binding protein signature | 86 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g01334 | 225 | PRINTS | Ethylene responsive element binding protein signature | 109 | 125 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g01334 | 225 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo06g01334 | 225 | MobiDBLite | consensus disorder prediction | 54 | 85 | - | - | |
Cmo06g01334 | 225 | Gene3D | AP2/ERF domain | 85 | 145 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo06g01334 | 225 | CDD | AP2 | 86 | 145 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g01334 | 225 | ProSiteProfiles | AP2/ERF domain profile. | 85 | 143 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g01334 | 225 | Pfam | AP2 domain | 86 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g01334 | 225 | SUPERFAMILY | DNA-binding domain | 86 | 144 | IPR016177 | GO:0003677 | |
Cmo06g01334 | 225 | PANTHER | DNA-BINDING DOMAIN | 27 | 216 | IPR044808 | GO:0003700|GO:0009873 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01334 | Cmo-Chr6:9931260 | Cmo08g00292 | Cmo-Chr8:1799748 | 1.35E-45 | dispersed | |
Cmo14g01846 | Cmo-Chr14:13963597 | Cmo06g01334 | Cmo-Chr6:9931260 | 9.97E-101 | wgd | |
Cmo19g00097 | Cmo-Chr19:548824 | Cmo06g01334 | Cmo-Chr6:9931260 | 2.17E-53 | wgd | |
Cmo02g01795 | Cmo-Chr2:10198332 | Cmo06g01334 | Cmo-Chr6:9931260 | 1.12E-51 | wgd | |
Cmo06g01334 | Cmo-Chr6:9931260 | Cmo08g01062 | Cmo-Chr8:6866695 | 6.25E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10014 | PF00847 | AP2 | 9.60E-15 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g01334 | K14516 | - | csv:101210326 | 331.643 |