Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01335 ATGGACAACAGCGGTGGCCGTGGAAAGGATTACACGGAGGATTCCGCCGCAGCTGGAGGCGGGAAAGAGATCATCCGTTACCGGGGAGTACGACGACGGCCGTGGGGTAAATTCGCGGCGGAGATACGTGACTCTAGAAGGCAAGGAGTGCGTATTTGGTTGGGGACGTTCAACACCGCGGAGGAAGCCGCACGAGCTTACGATCGGGCGGCTTACAACATGAGGGGTCATTTGGCGATTTTGAACTTTCCGAGTGAATACCCGCCGAGGAGCTCCGGCGGTGGAGGCGGAGGCGGATTTTGTTCTTCATCTTCTTCAAGGTCAATGCAGCAAGATGAAGTGATTGAATTTGAGTATTTGGACGATAAAGTGCTGGAGGATCTTCTTGAGTTTAGGATTAAAAAAACTAATAATTTTCTTGTTAATATGGAAAATGACGTGGCTGATCCTACAGCACAATCGCCCAGGGAAACATTTGTAACTACTGTCCTAATTATTAGAGTATAA 507 49.11 MDNSGGRGKDYTEDSAAAGGGKEIIRYRGVRRRPWGKFAAEIRDSRRQGVRIWLGTFNTAEEAARAYDRAAYNMRGHLAILNFPSEYPPRSSGGGGGGGFCSSSSSRSMQQDEVIEFEYLDDKVLEDLLEFRIKKTNNFLVNMENDVADPTAQSPRETFVTTVLIIRV 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9933941 9938763 - CmoCh06G013350.1 Cmo06g01335 384897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01335 168 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Cmo06g01335 168 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Cmo06g01335 168 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Cmo06g01335 168 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Cmo06g01335 168 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
Cmo06g01335 168 PANTHER ETHYLENE RESPONSE FACTOR 20 133 - -
Cmo06g01335 168 Pfam AP2 domain 26 77 IPR001471 GO:0003700|GO:0006355
Cmo06g01335 168 PANTHER DNA-BINDING DOMAIN 20 133 IPR044808 GO:0003700|GO:0009873
Cmo06g01335 168 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
Cmo06g01335 168 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01335 - - - csv:101213488 179.489
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01335 Cmo08g01063 CCT
Cmo06g01335 Cmo08g01063 ECH
Cmo06g01335 Cmo14g01844 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01335 Cmo-Chr6:9933941 Cmo08g00293 Cmo-Chr8:1804891 1.51E-42 dispersed
Cmo14g01844 Cmo-Chr14:13956183 Cmo06g01335 Cmo-Chr6:9933941 1.50E-53 wgd
Cmo06g01335 Cmo-Chr6:9933941 Cmo08g01063 Cmo-Chr8:6874142 2.18E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g675 . Blo12g00365 Bda03g00843 Bda08g00272 Bpe04g00797 Bpe14g01246 . Bma05g01069 Cmo08g01063 . Cma06g01331 Cma14g01808 Car06g01142 Car14g01624 . Cpe08g00329 Cpe03g01512 Bhi01g00724 . . . . . . Cla06g00656 Cam06g0701 Cec06g0706 Cco06g0714 Clacu06g0689 Cmu06g0680 Cre06g1449 . . Cone7ag0317 Cone4ag0322 Lsi05g01724 Csa02g01072 Chy05g00332 Cme06g00502 . Blo07g00256 Bda11g00626 Bda13g00070 Bpe05g00860 Bpe13g00562 Bma02g00791 . Sed02g1402 Cmo06g01335 Cmo14g01844 Cma08g01087 Cma17g00168 Car08g00962 Car17g00147 . Cpe17g00191 Bhi12g01631 Tan06g2419 Cmetu06g0922 Lac12g2186 Hepe03g0273 . Lcy13g0366 Cla05g00453 Cam05g0494 Cec05g0503 Cco05g0502 Clacu05g0489 Cmu05g0466 Cre05g0529 Lsi09g01241 Csa03g01218 Chy06g00481 Cme05g00555
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000583 4 2 2 3 4 4 2 4 4 4 4 4 5 4 4 4 4 3 3 4 4 4 2 3 4 4 3 5 3 2 106
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10015 PF00847 AP2 9.30E-16 CL0081 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01335 Cmo_Chr06 FPKM 14.980983 17.634548 17.995674 16.695351 17.243454 12.584474 14.407363 46.915955 48.742752 47.234886