Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01337 ATGGATCCATTGGAGGACCAGAGCAGTTCGGATTTTCTTGATTACTCGTTGTTCGCCGACGCCGACAACATTGTTAGCCCTTCGCTCGGTCCTCTATGGCTGCCTAATGATTTCAGGGATGGCGGTGCGGATACGGGTGTTTCAGCCGGGCGTGTTGAATCTGAAGAAACCGATTGTTTGCGGAAGAGGGTGCGAGATGAGCCGTGCACTGGACCGACTTCTAAAGCTTGTCGCGAGAGGTTGCGGAGAGGGAGATTAAATGATAGGCAAGCATTTTTTTTGTCATCCAACTCTTTTGCATACCTGCTTCTTTTCATTCTTTTGTTTGATGATGATGATAATATTGGGAGGACAAGTCTAATGGTGTTTCTAGATTTGAGCCATGCTTTAGAACCCGATAGACCTGCCAAAACGAACAAGCCTGCCATACTTGATGATGCCATTAGAGTGTTGAATCAACTCAAGACTGAAGCTGAAGAGCTCAAACAAACTAACGAAAAGCTACGGGAAGAAGTGGAGTGTTTAAAGGCAGAGAAAAATGATCTTCGGAAGGAGAAAACAATTTTGAAGGAAGACAAAGATAGAATCGAGCAACAGTTGAAATCTATGGCCATTCCACCTCCAGGGCTTATCCCAGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTTTGATACCAATGTGGCCATATCTTCCTCCATCAGTATGTGATACTTCTCAAGATCATGAGCTCAGGCCTCCTGCTGCTTAG 777 45.56 MDPLEDQSSSDFLDYSLFADADNIVSPSLGPLWLPNDFRDGGADTGVSAGRVESEETDCLRKRVRDEPCTGPTSKACRERLRRGRLNDRQAFFLSSNSFAYLLLFILLFDDDDNIGRTSLMVFLDLSHALEPDRPAKTNKPAILDDAIRVLNQLKTEAEELKQTNEKLREEVECLKAEKNDLRKEKTILKEDKDRIEQQLKSMAIPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWPYLPPSVCDTSQDHELRPPAA 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9943050 9946084 + CmoCh06G013370.1 Cmo06g01337 384899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01337 258 PANTHER TRANSCRIPTION FACTOR BHLH104 2 89 - -
Cmo06g01337 258 PANTHER TRANSCRIPTION FACTOR BHLH104 123 258 - -
Cmo06g01337 258 Gene3D - 144 205 - -
Cmo06g01337 258 PANTHER BHLH TRANSCRIPTION FACTOR 2 89 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cmo06g01337 258 Coils Coil 144 199 - -
Cmo06g01337 258 PANTHER BHLH TRANSCRIPTION FACTOR 123 258 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01337 - - - csv:101210812 325.094
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01337 Cmo14g01842 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01337 Cmo-Chr6:9943050 Cmo16g00916 Cmo-Chr16:5522341 1.99E-46 dispersed
Cmo14g01842 Cmo-Chr14:13948716 Cmo06g01337 Cmo-Chr6:9943050 9.11E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g672 . . . . . . . . . . Cma06g01333 Cma14g01806 Car06g01144 . . Cpe08g00327 . . . . . . . . . . . . . . . . . Cone7ag0314 Cone4ag0319 Lsi05g01719 . . Cme06g00505 . Blo07g00255 Bda11g00625 . . Bpe13g00563 . Bma06g01596 . Cmo06g01337 Cmo14g01842 . . . . . . . . . . . . . Cla05g00455 Cam05g0496 Cec05g0505 Cco05g0504 Clacu05g0491 Cmu05g0468 Cre05g0531 . Csa03g01221 Chy06g00483 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002713 3 0 2 2 2 1 2 1 1 1 1 1 3 2 2 3 1 4 2 1 2 2 2 2 2 2 1 2 2 3 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01337 Cmo_Chr06 FPKM 11.018365 9.277 9.343277 8.703429 10.801511 11.96995 10.74697 20.787607 21.67333 23.155966
Cmo06g01337 Cmo_Chr00 FPKM 2.239656 2.66031 2.746827 2.668984 3.917704 4.839218 3.901288 5.357769 5.466412 6.74488