Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01342 ATGTCGGAGGCGAAGAAGTTGCCGATCCGTAACAGGAGTCTGTTCTTGAACCTCGGATCTGCAACAAGAAACATGGGGTTCTTCTCCTTCCTTGGACGGGTCCTCTTTGCCTCCATCTTCATCCTCTCCGCTTGGCAAATGTTTAATGAGTTTAGCAACAATGGTGGGTCAGCGGCTGCGGAATTGTCTCCAAAGGTAGCTGTTTTGAGGAGAAATTTATCATCCAAGCTGGGGGTAGCGATACCTGACATTGATGTCACACACTTGGTTGCCATTTCTTTATCTCTTAAAGGAATTGGAGGCCTTCTGTTTGTTTTTGGAAGCAGCGTTGGAGCTTATCTCCTGCTTCTGCAATTGGCTATAATCACTCCGGTTCTTTATGATTTCTTCAACTTTAGCCCCCAGAATCCTTTTTTCGGTATCCTGCTCAGCGATTTCTTGCAGCACATTGCACTTTTTGGTGCTCTGCTGTTCTTCTTGGAGATGAAGAACACAGTTCCAAAGAGGCAACCGAAAAAGAAGGCGCCGAAAACAAAAACTTGGCTGTTCTCTATTTCTCTGATTTACTTTACTTCATTATTGTCTTCTGATGAGTTATTATTTAAGTTGAGCTGCGGCATAATAGCGCCAATTTGGGGTGTGGTCAGCTCGGCTACGCTGCAGCGTCCTGCAGACTGCAAGACGAACGCCATCGCCATCGCCATGGAATACCTAAAATCAGTCGTCCCTTCACAACTTATTTCCGAACGAGGTTCTAATTTGGTAGTGATAAACCCAGGATCTGCAAATATTAGGATTGGGCTTGCGTCGCAGGATGCTCCTTTTAATATTCCTCATTGCATTGCTCGTTATACCAATCAAGTTCCCAAGAGAAGTGTTCAAGATCAGATGCTTAATTCACAAGTTACAACTGCACAGCACATGGAGCGAGAGAGGGCGTATGATGTTATTGCCTCGTTGATAAAAATACCGTTTCTGGATGAAGAGGTTGCTAACAATTCTTTCCCGCGTAAGATGGGACGAATTGATGGACATCATAATGGCAAGAGGGATACTGTCTTTACTTGGACTGACGTACATGAGAGGGACCCTACCTTGTCAGTCACTGTGGAAAGTTCAAGCTCCAAGGATGTGAGCCAGTCTTTGGACCAGCATGTAGAGACTGATTCCAAGGAGCTTAGTCCCAGTGTAATCAAATATAGACAGTTTATTTGCGGTGAGGATGCTCTTAAAATATCACCCATTGAGCCATATTGTCTACACCGGCCTATTCGCAGAGGTCACTTTAATATCTCACAACATTACTCTATGCAACAGGTACTTGAGGACTTGCATGCTATTTGGGACTGGATTTTGATAGAAAAACTACATATCCCTCTTAGTGAAAGAAACTTGTATTCTGCTATTCTGGTCGTCCCTGAAACATTTGACAACCGCGAAATAAAGGATATGTTGACTATGGTACTGCAAGATTTGCGGTTTGGTTCAGCAGTGGTTCATCAGGAAGGGCTTGCTGCAGTTTTTGGTAATGGACTATCTTCAGCATGTGTTGTTAACATGGGAGCACAGGTGACAACAATTATTTGCATCGAGGATGGAGTTGCTCTGCCTGCGACAGCAAAGACTTTGCCTTTCGGGGGAGAGGACGTATCTAGATGCCTCCTGTGGACTCAGAGGCATCATCAGACTTGGCCACCAATCCGTACTGACATCTTGTCGAAGCCTGTTGATCTTCTGATGCTTAATAGACTGAAAGAGTTCTACTGTGAGATTAAGGAAGGGGAGGTCGATGCTGTTGCTGTAGTTCACTCGTATGAAGAAGGCACCCCTGCTGGTTCTCATAAAACAAGACTGACTGCGCTTAATGTACCACCTATGGGTTTGTTCTTCCCAATGCTATTGGTTCCAGATGTGTATCCACCACCACCCCGTGCATGGTTTCATGACCATGAGGATATGCTGGAAGAGACATGGCATACAGAGTACTCCAGAAGACCTGATTTACCCGATAATGTATATCCTGGCGTTAACGTTAATTTCCCCATGTGGGATAGCTACCCAGTTTATGCAACTAAACCAAAGAAAGAAGAGAACGTTGGTCTTGCTGAAGCTATCACCAGCAGCATCCTCTCAACAGGGCGGATTGACCTCCAGAGGAAACTGTTCTTAAGCATACAGTTAGTTGGTGGGGTGGCTTTGACAAGGGGTCTTGTTCCTGCAATGGAGGAAAGAGTCTTGCATGCAATTCCTTCAAATGAAGCGATAGACACTGTTGAGGTGTTGCAATCAAGAACAAACCCTTCTTTTGCATCATGGAAAGGCGGAGCGATTATTGGAGTGCTTGATTTTGGGCGGGATGCTTGGATACATCGTGAAGACTGGATTAACAGCGGAATTTTTGTTGCAAGTGGCAGAAAATACAAGGATTCTTATTATCTTCAAGCACAAGCGATGTGCTACATGAACTCCTAA 2472 44.74 MSEAKKLPIRNRSLFLNLGSATRNMGFFSFLGRVLFASIFILSAWQMFNEFSNNGGSAAAELSPKVAVLRRNLSSKLGVAIPDIDVTHLVAISLSLKGIGGLLFVFGSSVGAYLLLLQLAIITPVLYDFFNFSPQNPFFGILLSDFLQHIALFGALLFFLEMKNTVPKRQPKKKAPKTKTWLFSISLIYFTSLLSSDELLFKLSCGIIAPIWGVVSSATLQRPADCKTNAIAIAMEYLKSVVPSQLISERGSNLVVINPGSANIRIGLASQDAPFNIPHCIARYTNQVPKRSVQDQMLNSQVTTAQHMERERAYDVIASLIKIPFLDEEVANNSFPRKMGRIDGHHNGKRDTVFTWTDVHERDPTLSVTVESSSSKDVSQSLDQHVETDSKELSPSVIKYRQFICGEDALKISPIEPYCLHRPIRRGHFNISQHYSMQQVLEDLHAIWDWILIEKLHIPLSERNLYSAILVVPETFDNREIKDMLTMVLQDLRFGSAVVHQEGLAAVFGNGLSSACVVNMGAQVTTIICIEDGVALPATAKTLPFGGEDVSRCLLWTQRHHQTWPPIRTDILSKPVDLLMLNRLKEFYCEIKEGEVDAVAVVHSYEEGTPAGSHKTRLTALNVPPMGLFFPMLLVPDVYPPPPRAWFHDHEDMLEETWHTEYSRRPDLPDNVYPGVNVNFPMWDSYPVYATKPKKEENVGLAEAITSSILSTGRIDLQRKLFLSIQLVGGVALTRGLVPAMEERVLHAIPSNEAIDTVEVLQSRTNPSFASWKGGAIIGVLDFGRDAWIHREDWINSGIFVASGRKYKDSYYLQAQAMCYMNS 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9957267 9971503 + CmoCh06G013420.1 Cmo06g01342 384904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01342 823 Gene3D - 346 527 - -
Cmo06g01342 823 MobiDBLite consensus disorder prediction 367 381 - -
Cmo06g01342 823 Gene3D - 243 322 - -
Cmo06g01342 823 Gene3D Actin; Chain A, domain 4 533 634 - -
Cmo06g01342 823 PANTHER ACTIN 237 805 IPR004000 -
Cmo06g01342 823 SUPERFAMILY Actin-like ATPase domain 252 518 IPR043129 -
Cmo06g01342 823 PANTHER ACTIN-RELATED PROTEIN 8 237 805 IPR027668 GO:0006338|GO:0031011
Cmo06g01342 823 MobiDBLite consensus disorder prediction 367 387 - -
Cmo06g01342 823 SUPERFAMILY Actin-like ATPase domain 511 802 IPR043129 -
Cmo06g01342 823 Pfam Actin 253 799 IPR004000 -
Cmo06g01342 823 Gene3D - 771 798 - -
Cmo06g01342 823 SMART actin_3 252 808 IPR004000 -
Cmo06g01342 823 Gene3D - 699 770 - -
Cmo06g01342 823 Pfam HR-like lesion-inducing 25 162 IPR008637 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01342 K11673 ACTR8, ARP8, INO80N; actin-related protein 8 - csv:101213005 1095.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01342 Cmo08g01068 CCT
Cmo06g01342 Cmo17g00169 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01342 Cmo-Chr6:9957267 Cmo14g01838 Cmo-Chr14:13939830 2.31E-71 dispersed
Cmo14g01837 Cmo-Chr14:13935319 Cmo06g01342 Cmo-Chr6:9957267 7.98E-19 wgd
Cmo17g00169 Cmo-Chr17:993516 Cmo06g01342 Cmo-Chr6:9957267 3.48E-49 wgd
Cmo06g01342 Cmo-Chr6:9957267 Cmo08g01068 Cmo-Chr8:6891343 3.27E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g651 . . . . . Bpe14g01243 . . Cmo08g01068 Cmo17g00169 Cma06g01337 . . . . Cpe08g00324 . . . . . . . . Cla06g00650 Cam06g0695 Cec06g0699 Cco06g0705 Clacu06g0682 Cmu06g0673 Cre06g1442 . . . . . Csa02g01077 Chy05g00337 Cme06g00510 Blo02g00732 Blo07g00253 . . . Bpe13g00565 . . Sed07g0437 Cmo06g01342 . Cma08g01092 Cma17g00172 Car08g00967 Car17g00152 Cpe12g00148 . Bhi12g01638 Tan06g0995 Cmetu01g1325 . . . . . . . . . . . Lsi09g01247 . . Cme05g00549
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011275 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01342 Cmo_Chr06 FPKM 0.0 6.586588 0.0 0.0 9.035649 0.0 0.0 0.0 0.0 0.0