Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01350 ATGGCTGGTGCCGTTAGTGAAGAGGCTATAGGGATGAGGTCCGTGGAGAGTTTTGCAAATGGGCATCACAGTCAGTCTGGAGAAGCATTGGCTGAATGGAGGTCTTCTGAGCAAGTGGAAAATGGAACACCATCAACTTCACCGCCATACTGGGACACCGATGATGAAGAAGAAGAAGAAGCTGGACCAAAACCTTCTGAATTGTATGGAAAACATACATGGAAAATAGAAAAGTTTTCTCAACTTAACAAACGTGAACTCAGAAGTAATGCATTTGAGGTTGGGGGCTACAAATGGTACATTTTAATATATCCTCAGGGTTGTGATGTCTGCAATCATCTCTCTCTGTTTCTTTGTGTCGCAAATCATGATAAACTCCTTCCAGGTTGGAGCCATTTTGCACAGTTTACTATAGCAGTGGTGAATAAGGACCCAAAGAAATCAAAATATTCTGATACGTTACATCGGTTCTGGAAGAAAGAACATGACTGGGGATGGAAAAAGTTCATGGAGCTTTCTAAAGTATTAGATGGTTTTATCGACTCTGACACTCTCATAATAAAGGCACAAGTTCAAGTGATTAGGGAGAAAGCTGACCGGCCTTTTCGTTGCCTTGATTGTCAGTATAGGAGAGAACTTGTTAGGGTTTATTTGACAAATGTTGAGCAGATATGTCGACGTTTTGTGGAAGAGAGAAGAAGTAAGCTGGGGAAGCTGATAGCTGATAAAGCTCGATGGTCAAGTTTTCGAGCTTTCTGGTTGGGAATTGACCAGAATGCTAGACGACGTATGTCTAGGGAAAGGACCGATGCAATTCTAAAAGTTGTTGTAAAACACTTCTTTATAGAGAAGGAGGTGACATCTACTTTAGTGATGGACTCATTATACAGTGGATTGAAGGCTCTTGAAGGGCATACCAAGAATAAGAAGGGGAAAGCAAAACTATTAGATTCTGAAGAGATGCCAGCTCCAATAGTTCACATAGATAAAGACACATTTGTGTTGGTGGATGATGTACTATCTCTGCTCGAGAGGGCTGCTGTGGAACCATTACCACCAAAAGATGAGAAAGGCCCACAAAATCGTACAAAGGATGGTAGCTCTGGAGAAGACTTTAACAAAGATTCCATTGAACGTGATGAAAGGCGTCTTACAGAACTCGGTCGTAGGACTGTGGAAATATTTGTTCTTGCCCATATATTTAGTAAAGTTGAAGTTGCCTATCAGGAGGCTGTTGCATTGAAAAGGCAAGAGGAACTCATTCGTGAAGAAGAGGCAGCATGGCAGGCTGAAAGTGAACAAAAGGCGAGACGATTAGCTTCAGAAAAGGATAAGAAATCGAAGAAAAAACAGGCTAAACAAAAACGAAATAACCGCAAAAGCAAGGATAAAGGGAGAGAAGAACGGACAAATGTGGCTGCACTGATCAGAGAACAAGTAAATCCTTGCAATGGGAAGGAGGAAGATGCCATAGTGGATGAGGTGCAGCCCGTGCTTGAAAAGTCTGACTTACCTGAAGTTGTATCGGATGTCTCTGATTCGGTTGAAGGGGTTGGCGAAGTACTTCAGCCTGATTCAGAAGACAGAGATGCCAATGCTGTTAATTCGGACACGGACACATCAGAAGTTCATCCTTCAACGGAAGCAAGTAGCAGTTGCATTGGTAGTCTGTCTTCTGCACAAACGCCCTTATCCGACAAGAAGCTGTCTATCATGGATGATAGCTCTTCTACATGTTCTACTGATTCTATTCCATCCGTGGTAATGAATGCGTCTTATAAGGAGAATTCCTTTCACAACTACAAAAAGCAGAAATCACCTAGCATAGGAAAGAATCGGCAGAAGGATGTAGCATACGATCGGAGCTTTTGTGCCAACGACGTGGATAGTCAGTCATCAATGATTACAGCTGGCATAGAAGACCGAAGTGATGCTTGTGGTAGTAACAAGTCTAAAAAGTCTGATCCTATGGCAGTTAATCATTCTCCCCGGGGTAAAATGAAAAGGGTCGAACAGCAGGCTGCTAAGAAGGAAGAAAAGGCTATTTCGTTGCCGAAGGAACAAAGCTCTAAAAACCAGGTCGATATGGAAAGGATACTTAGAGATGCGTCGGCAGCGGTACCATCCTCCCCTCAGAACCACCAGGATCATATACCATCGATTGTTGAACAGAGGTTAAGCAATCAGAGTATTGGTACTGTTGATCCCATTCAAAATAATCCATCATCCTCAACTAGCGTACACCAGATGGAGAAGGCTGTGCCTGTAGTTACCTCATCCTATGTGGTAAGTGCAATAAAATCAGAGGCTCAGAAGTCTACAATTCCAAAACCAACTGAAAAGGCTACCTCACAGCAATCTCCTATGATGTCAAGACCTTCTAGTGCACCTCTAATTCTCGGTCCAAGAGCTGCAGCACCTGTTGTTAATGTGGTTCATACATCCCCATTGCTCGCTCGTTCCGTGAGTGCAGCTGGTCGGTTAGGTCCAGACCTTGCTCCAGCAACACATAGTTATGCTCCCCAGTCTTATAGGAATGCCATAATTGGAAACCATGCAACTCCGAGCAGTGCTGGATATGTTCATCTGAGCACTTCATCTACAAGCGTGAGCCCATCTTCAGCCTTCTCTTTGACATCTGCTATGGTTTCTTCACCCATGTTTGTACCACACAACTCTGACAGGTCGGATCTGAGTGCTGTTAGATCGAATTTTCCTTTTGGTATGGTAACTCGAGATGTCTTACCGAACAGTCCCCAGTGGGTAGAGGGTTCACAGAGGGAAGCTGTTAGGAGCATGCATTACAATTCTTCCCTACTTGATGATGTTCAAGATTTATACAAGAAACAAATTCGTGGTTCGACACATGAACTTCTGTCAGCAGAGCTCTCAGCTTGTACGTCTGGTCGACAACTCCAAGGTTTCGCTGAGGAGTTCCCTCACCTTGATATAATCAACGATCTTCTTGATGACGAAAACATTGTTGGGATTTCATCTAGAGACAGCTCAATGTTCAACTCTCTTGGCAGTGGCCCAAGTCTGTTGAACAGACAGTTCTCTCTTCCTGGTGACATGGTAGGGAAGGCTGGCGATATAGGGTCCTCCACGAGCTCTTGCAGGTTCGAGCGGACACAGAGTTATCAAAATGGCAGGTTCCAATGGGGGTATGGCTCGTCCATCAGTCGTTACGAACCAGGCATGGATTTTATTCCACCTTCGAGTCAACAACAACAGCACCTAAATGGCCAGATTGATGGGTTGATTCCAAATTGGCGCGCAGCTTCTGATCTCTCTGTACTTGGGACAAGGTCTTTAGACTTTGATGGTTACCAATATCTTAACCCAGAATACTCAAATATGGCTCATGGCGTCAATGGATACATGGCTTTCATTCTTATTCTCTTGCAGCTTCTGCCAAACGCAGCTGGTAGGACGCTGCCTGAGAAGCCAGCAATGGTGAGAAGAAGGGAGCTGGAAATGGAGCTGAAGTTGAAGCTGCAGTCTCTTCAGAGGGTCAGAGTGCCACCCTCTGGCCCCTCCGGTTGCACGTTCATTCCCGGCACCAACGGCCCTGGCTGTCCTCTCGAAGTGAGGCACTACGCTGGCAACGGTTCAAAGCAACGTTCGAGCACACTCCGACGCTATGCCACCCCTGTTCGTGTCGTCGAGGCTCTCATCTGA 3681 44.99 MAGAVSEEAIGMRSVESFANGHHSQSGEALAEWRSSEQVENGTPSTSPPYWDTDDEEEEEAGPKPSELYGKHTWKIEKFSQLNKRELRSNAFEVGGYKWYILIYPQGCDVCNHLSLFLCVANHDKLLPGWSHFAQFTIAVVNKDPKKSKYSDTLHRFWKKEHDWGWKKFMELSKVLDGFIDSDTLIIKAQVQVIREKADRPFRCLDCQYRRELVRVYLTNVEQICRRFVEERRSKLGKLIADKARWSSFRAFWLGIDQNARRRMSRERTDAILKVVVKHFFIEKEVTSTLVMDSLYSGLKALEGHTKNKKGKAKLLDSEEMPAPIVHIDKDTFVLVDDVLSLLERAAVEPLPPKDEKGPQNRTKDGSSGEDFNKDSIERDERRLTELGRRTVEIFVLAHIFSKVEVAYQEAVALKRQEELIREEEAAWQAESEQKARRLASEKDKKSKKKQAKQKRNNRKSKDKGREERTNVAALIREQVNPCNGKEEDAIVDEVQPVLEKSDLPEVVSDVSDSVEGVGEVLQPDSEDRDANAVNSDTDTSEVHPSTEASSSCIGSLSSAQTPLSDKKLSIMDDSSSTCSTDSIPSVVMNASYKENSFHNYKKQKSPSIGKNRQKDVAYDRSFCANDVDSQSSMITAGIEDRSDACGSNKSKKSDPMAVNHSPRGKMKRVEQQAAKKEEKAISLPKEQSSKNQVDMERILRDASAAVPSSPQNHQDHIPSIVEQRLSNQSIGTVDPIQNNPSSSTSVHQMEKAVPVVTSSYVVSAIKSEAQKSTIPKPTEKATSQQSPMMSRPSSAPLILGPRAAAPVVNVVHTSPLLARSVSAAGRLGPDLAPATHSYAPQSYRNAIIGNHATPSSAGYVHLSTSSTSVSPSSAFSLTSAMVSSPMFVPHNSDRSDLSAVRSNFPFGMVTRDVLPNSPQWVEGSQREAVRSMHYNSSLLDDVQDLYKKQIRGSTHELLSAELSACTSGRQLQGFAEEFPHLDIINDLLDDENIVGISSRDSSMFNSLGSGPSLLNRQFSLPGDMVGKAGDIGSSTSSCRFERTQSYQNGRFQWGYGSSISRYEPGMDFIPPSSQQQQHLNGQIDGLIPNWRAASDLSVLGTRSLDFDGYQYLNPEYSNMAHGVNGYMAFILILLQLLPNAAGRTLPEKPAMVRRRELEMELKLKLQSLQRVRVPPSGPSGCTFIPGTNGPGCPLEVRHYAGNGSKQRSSTLRRYATPVRVVEALI 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9995309 10003218 + CmoCh06G013500.1 Cmo06g01350 384912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 432 447 - -
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 18 50 - -
Cmo06g01350 1226 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1 1130 - -
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 657 694 - -
Cmo06g01350 1226 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 53 198 IPR008974 GO:0005515
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 770 793 - -
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 432 472 - -
Cmo06g01350 1226 PANTHER TNF RECEPTOR-ASSOCIATED FACTOR HOMOLOG 1A 1 1130 - -
Cmo06g01350 1226 SUPERFAMILY TRAF domain-like 70 196 - -
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 536 559 - -
Cmo06g01350 1226 Pfam MATH domain 76 193 IPR002083 GO:0005515
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 640 694 - -
Cmo06g01350 1226 ProSiteProfiles MATH/TRAF domain profile. 69 191 IPR002083 GO:0005515
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 770 794 - -
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 350 377 - -
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 520 559 - -
Cmo06g01350 1226 SMART math_3 71 175 IPR002083 GO:0005515
Cmo06g01350 1226 MobiDBLite consensus disorder prediction 16 68 - -
Cmo06g01350 1226 CDD MATH 70 192 IPR002083 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01350 - - - cpep:111790110 1879.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01350 Cmo14g01824 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01350 Cmo-Chr6:9995309 Cmo14g00390 Cmo-Chr14:1803204 6.82E-26 dispersed
Cmo14g01824 Cmo-Chr14:13896277 Cmo06g01350 Cmo-Chr6:9995309 0 transposed
Cmo14g01823 Cmo-Chr14:13895177 Cmo06g01350 Cmo-Chr6:9995309 1.97E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g630 . . . . . Bpe14g01234 . . . . . Cma14g01788 Car06g01154 Car14g01608 . Cpe08g00316 Cpe03g01496 . . . . . . . . . . . . . . . Cone15ag0145 Cone7ag0302 Cone4ag0302 Lsi05g01689 . . Cme06g00531 Blo02g00618 Blo07g00248 Bda11g00616 Bda13g00083 . Bpe13g00570 Bma02g00802 Bma06g01587 . Cmo06g01350 Cmo14g01824 . . . . . . . . . . . . . Cla05g00474 Cam05g0515 Cec05g0529 Cco05g0529 Clacu05g0516 Cmu05g0490 Cre05g0556 . Csa03g01250 Chy06g00504 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003455 2 0 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 3 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01350 Cmo_Chr06 FPKM 1.237705 0.0 17.25696 11.525185 87.041313 70.790543 84.64917 7.770148 7.338651 7.91062