Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g01351 ATGCTTCCTCTTCACCAATGCATCGCCCCCCTCCTACTTCACTTCATCTTCCTCGCACCTTTTTCGCTGGCCATAGCTCAGAATCATGAAGACCCAACCATCAGAACCATGGAGGCTTTCTCCGGCTATCCTCTTCACGAACCCTCCTCCTCTTCTATCCCAAACCCCATTTCTTCTCTCCTCGTCGATGCGGATTCCTTGGTGAAACAGATTGAGGAGCTTTCTACTTTCTCGGATTCTCCTTCCCCATCGGTTACCAGGGTTCTTTACTCTGAAAAGGATGTATTGGCGCGAAGGTATGTCAAGAACTTGATGGGGCTCTCTGGTCTCTTTGTTAGAGAGGATGCTGTCGGTAACATATTCGGTAGATGGGAGGGCTCTGAACCAGAGCTTCCTGCTGTTGCAACAGGCTCTCATGTTGATGCAATTCCATTCTCTGGCAAATACGATGGAGTTGTTGGTGTTTTAGGTGCTTTAGAAGCCATCAATGTCTTGAAAAGGTCGGGGTTCAAACCAAAGAGGTCTCTAGAAATTATCTTCTTTACCTCTGAGGAACCTACACGCTTTGGAATCAGCTGCTTGGGTAGCCGCTTGATGGCAGGGAGTGATGCACTTGCTAAAGCTTTGGAGACAACTGTTGATGCTCAGAATATATCTTTTATTGAAGCTGCTAGCTCTGCTGGGTACTTGACTGATTCAGCTCAGATATCAACGGTGTTTCTGAAGAAAGGAAGTTACTCTGCTTTCCTGGAATTGCACATAGAGCAGGGGCCCATTCTGGAGGAAGAAGGTATATCTATAGGAGTAGTGACTGCCATTGCAGCTCCTGCTAGTATAAAGGTGGAGTTTGAAGGCACTGGAGGCCATGCCGGTGCTGTACTGATGCCATATAGAAATGACGCTGGACTGGCAGCAGCTGAGCTAGCACTAGCAGTTGAGAAGCATGTATTGAGCTCTGGATCGATCGATACTGTCGGTACCGTTGGTATTCTGGAGCTTCATCCTGGAGCAATCAACAGCATTCCAAGCAAATCACATCTGGAAATAGACACCAGAGACATTGATGAAGAACGCAGAAATACTGTCATTAAGAAGATTCATGAATCTGCAACTGAAATAGCTCAAAGGCGACGGGTCAAACTATCAGAATTCAAAATTATAAACCAGGATCCACCAGCACATTCTGACAAATCAGTAATAGAGGCAATGGTTTCTTCAACAAAAGAGCTCAATCTCACACACAAGCTGATGATCAGCAGAGCATACCATGATTCACTGTTTATGGCCAGGATATCCCCAATGGGCATGATATTCATTCCTTGCTATAAAGGGTACAGCCACAAGCCTGAAGAATTCTCCTCTCCCCAGGATATATCAAATGGAGTCAAGGTATTAGCCCTTACCCTTGCCAAATTGTCCCTGCAGTGA 1428 46.01 MLPLHQCIAPLLLHFIFLAPFSLAIAQNHEDPTIRTMEAFSGYPLHEPSSSSIPNPISSLLVDADSLVKQIEELSTFSDSPSPSVTRVLYSEKDVLARRYVKNLMGLSGLFVREDAVGNIFGRWEGSEPELPAVATGSHVDAIPFSGKYDGVVGVLGALEAINVLKRSGFKPKRSLEIIFFTSEEPTRFGISCLGSRLMAGSDALAKALETTVDAQNISFIEAASSAGYLTDSAQISTVFLKKGSYSAFLELHIEQGPILEEEGISIGVVTAIAAPASIKVEFEGTGGHAGAVLMPYRNDAGLAAAELALAVEKHVLSSGSIDTVGTVGILELHPGAINSIPSKSHLEIDTRDIDEERRNTVIKKIHESATEIAQRRRVKLSEFKIINQDPPAHSDKSVIEAMVSSTKELNLTHKLMISRAYHDSLFMARISPMGMIFIPCYKGYSHKPEEFSSPQDISNGVKVLALTLAKLSLQ 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10005728 10008524 + CmoCh06G013510.1 Cmo06g01351 384913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g01351 475 Gene3D - 275 391 - -
Cmo06g01351 475 Gene3D Zn peptidases 74 465 - -
Cmo06g01351 475 PANTHER ALLANTOATE DEIMINASE-RELATED 59 470 IPR010158 GO:0016813
Cmo06g01351 475 Pfam Peptidase family M20/M25/M40 136 470 IPR002933 GO:0016787
Cmo06g01351 475 TIGRFAM hydantase: amidase, hydantoinase/carbamoylase family 67 471 IPR010158 GO:0016813
Cmo06g01351 475 SUPERFAMILY Zn-dependent exopeptidases 61 472 - -
Cmo06g01351 475 SUPERFAMILY Bacterial exopeptidase dimerisation domain 278 386 IPR036264 -
Cmo06g01351 475 CDD M20_bAS 67 470 - -
Cmo06g01351 475 PANTHER ALLANTOATE DEIMINASE-RELATED 59 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g01351 K18151 UAH; ureidoglycolate amidohydrolase [EC:3.5.1.116] - csv:101216373 822.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01351 Cmo-Chr6:10005728 Cmo13g00873 Cmo-Chr13:7934505 8.81E-49 dispersed
Cmo06g01351 Cmo-Chr6:10005728 Cmo18g00247 Cmo-Chr18:1621910 7.30E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g622 . . . . . Bpe14g01231 . . . . . . Car06g01157 . . Cpe08g00313 . . . . . . . . . . . . . . . . Cone15ag0143 . . Lsi05g01678 . . Cme06g00537 Blo02g00611 . . Bda13g00085 . . Bma02g00804 . . Cmo06g01351 . . . . . . . . . . . . . . Cla05g00480 Cam05g0522 Cec05g0535 Cco05g0536 Clacu05g0522 Cmu05g0494 Cre05g0560 . Csa03g01255 Chy06g00509 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011290 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g01351 Cmo_Chr06 FPKM 12.411843 14.294519 28.538363 28.745989 43.765541 44.518021 43.237362 0.137007 0.445711 0.084842